PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g016930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Trihelix | ||||||||
Protein Properties | Length: 256aa MW: 29253.8 Da PI: 9.747 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 46.8 | 7.5e-15 | 21 | 104 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Liea ++ rl+rg+l++++W+ev+ + r+ g+ +r+ +qCk++++ l+k+yk +k+ + s++p++++l+ Sopen06g016930.1 21 CWSEGATETLIEAWGDRYLRLNRGNLRQKDWKEVAYSVnsRQNGVkpQRTDVQCKNRIDTLKKKYKLEKNKSTP------SKWPFYNRLD 104 7*************************************88777776689*****************99988875......58*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.0E-26 | 19 | 104 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MENQTTTQNT FRPHAGGRED CWSEGATETL IEAWGDRYLR LNRGNLRQKD WKEVAYSVNS 60 RQNGVKPQRT DVQCKNRIDT LKKKYKLEKN KSTPSKWPFY NRLDYLIAAN NVSASPCNRR 120 PSASISLAVK EKISPDSNFG ALNYSGGSSR LNSSGSNDSS HDDLAFGSGE RKNKMEYVGL 180 SEDTTAFKEL ARAILRFGEI YERIESSKQQ QMMELEKQRM EFTKELEVQR MNMFMETQLQ 240 IERSKCAAKH PPSAGK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00488 | DAP | Transfer from AT5G05550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015077088.1 | 0.0 | trihelix transcription factor ASIL2 | ||||
Swissprot | Q9LJG8 | 3e-33 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A3Q7GT18 | 0.0 | A0A3Q7GT18_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g051120.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13707 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05550.2 | 1e-62 | sequence-specific DNA binding transcription factors |