PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g015150.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 444aa    MW: 50903 Da    PI: 4.7969
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g015150.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.21.7e-143474311198
                       HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3  11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        ++++l++p + ++++  ++++++++  +l++++g+ W+v++    + g + + +GWk+Fv++n+Lke  ++vF+l++    el+v+vf+
  Sopen06g015150.1 347 KRRNQLYVPIDVVRDYklELPPNNKRAAVLRNSEGKGWKVNC--ITQNGYHAFCGGWKQFVSDNNLKE-QVCVFQLVN--ANELKVSVFN 431
                       56799*************99999999****************..66666688999************5.79****986..5556999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.89108200IPR003340B3 DNA binding domain
CDDcd100173.54E-6142197No hitNo description
Gene3DG3DSA:2.40.330.101.9E-9143202IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-9143202IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.754149200IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-19333431IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-16334431IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.673337433IPR003340B3 DNA binding domain
SMARTSM010191.3E-10340433IPR003340B3 DNA binding domain
PfamPF023621.1E-12347431IPR003340B3 DNA binding domain
CDDcd100173.99E-13348431No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MQCLGESVSD LISTMDMKNL NLLYFYMVAN KVKINCSMLH TAMKDRIFAQ ECGSKIVTVN  60
GRQLVHWKAQ LSDKIGHPQV IGVMMGFSLA RGKYGGVVRW EVQGEDSSWK VGSVEVEGDR  120
NLPGDNDIAG GEVSSAADSL SEDRFNNMWP MGVIKIERDL YFQYGWEKFV EDHNTLEYGD  180
FMIFDYDGNE TFDFKLLGMS GCVKEGAKCE KKKEVYVEHR KSVEQKEKNR IRDNNDNSSD  240
DDNADNYMIE EEESNDKEEV EKEEEEDDEE KETMEEVEDE AEEEEDEEEN EMTQTFKKRR  300
SGSKAGRRKA ITCKVRNMVD RHGTDIFKSG RATRPKNSYF VAKTVAKRRN QLYVPIDVVR  360
DYKLELPPNN KRAAVLRNSE GKGWKVNCIT QNGYHAFCGG WKQFVSDNNL KEQVCVFQLV  420
NANELKVSVF NDPSESLLKL AAQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089724.18e-99B3 domain-containing protein At5g60140-like
RefseqXP_025884759.18e-95B3 domain-containing protein Os12g0591400-like
TrEMBLM1AQ145e-60M1AQ14_SOLTU; Uncharacterized protein
STRINGSolyc01g108940.1.14e-99(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-06B3 family protein