PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g011230.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 267aa    MW: 30441.1 Da    PI: 6.7887
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g011230.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-1287139155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       ++++h e+Er+RR+++ + ++ Lr+ lP  +    ++K s ++   +A +YI +Lq
  Sopen06g011230.1  87 KKVMHREIERQRRQEMSTLYASLRQQLPLeN---IKGKRSTSDHILEAANYIEQLQ 139
                       6899*************************66...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-1484155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.90E-1084143No hitNo description
PROSITE profilePS5088813.11686138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-1087139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-1088158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-492144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDNFHSIFPL QQDDDANYDS HQQQLIFPHE TYTNPCNLIY QQDLVNDFAS FDSLELRDNN  60
LTFNNNTNNN QKGKSRVASS IEDKKHKKVM HREIERQRRQ EMSTLYASLR QQLPLENIKG  120
KRSTSDHILE AANYIEQLQK NVKNLEEKRE KLMKDSTGLS NVDGINKSGS STSRHCSTAA  180
IVTVKECLDG MEILVNCGLG FRLSRVLQVL LQEGLSIVNC SSTKTNTSSL LHTIRTEVSS  240
TDQPRIINVD VIQQKLTDII HDDTSFK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078781.10.0transcription factor bHLH36-like
TrEMBLA0A3Q7GQ831e-174A0A3Q7GQ83_SOLLC; Uncharacterized protein
STRINGSolyc06g035490.2.11e-175(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.14e-34bHLH family protein