PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g010800.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 445aa    MW: 49829.2 Da    PI: 6.0473
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g010800.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.3e-1584174199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k ++ps+v+   +l +pkkf++ h ++k+    ++l de+ ++   k+ ++k++    l++GW++F  a++L egD++vF+l++ s+f  +
  Sopen06g010800.1  84 FVKYMLPSHVSGGFWLGFPKKFCDCH-LPKHD-DIVVLVDENDEESPTKYLIDKNG----LSGGWRGFSIAHNLLEGDVLVFQLIQPSKF--K 168
                       8999*******************555.56544.4899*************889998....*************************99999..8 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v ++r+
  Sopen06g010800.1 169 VYIVRE 174
                       888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-2479175IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.1E-2080176IPR015300DNA-binding pseudobarrel domain
CDDcd100173.96E-2582173No hitNo description
SMARTSM010191.1E-2284175IPR003340B3 DNA binding domain
PROSITE profilePS5086311.1884175IPR003340B3 DNA binding domain
PfamPF023621.2E-1384174IPR003340B3 DNA binding domain
PfamPF052667.0E-8323430IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MAISSLYSSK KSPALSSSKK KALLIKKKTL APTKTNKVVN GGKKKVQICL EKKTLKHSSV  60
DVNSSAMLRA AEVQAKLPCQ FPSFVKYMLP SHVSGGFWLG FPKKFCDCHL PKHDDIVVLV  120
DENDEESPTK YLIDKNGLSG GWRGFSIAHN LLEGDVLVFQ LIQPSKFKVY IVRENCLTEI  180
DGAITLLNLD FRARPIKSDH DEEIKIFEAK EEKYLEPPVV DINQDDKIEE PMLLPNSDHD  240
PVADQCGNDS DNGSDVLEGI RFSESRVEFK DVKDYSGFNI IVDGLTIDSE VPALHIRTKY  300
YDLCRAQNSF LHDHLLAGLN VKLAAGMITE TVNIADAIRA CESSTPREYL ETWDNTLKGF  360
ECLGMNVGFL RARISKLDSL SSESKDVLES KKVELAEAKE EMRIIEEKVL KVKQVMKNVE  420
SEIEALTKKD ANFELNFKAL AASPW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077156.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLA0A3Q7GU180.0A0A3Q7GU18_SOLLC; Uncharacterized protein
STRINGSolyc06g034140.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30232343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-41B3 family protein