PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g004360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 296aa MW: 34393.4 Da PI: 4.7938 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.8e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT eEde+l ++++ G g+W++ ++ g+ R++k+c++rw +yl Sopen06g004360.1 14 RGRWTSEEDEILTNYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 8*******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 44.1 | 4.9e-14 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T +E+ +++++ + lG++ W++I ++++ gRt++++k++w+++l Sopen06g004360.1 67 RGNITSDEEAIIIKLRATLGNR-WSLIVEHLP-GRTDNEIKNYWNSHL 112 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.099 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.18E-7 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 22.952 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-12 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.86E-9 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MGRTPCCEKV GLKRGRWTSE EDEILTNYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LKSDLKRGNI TSDEEAIIIK LRATLGNRWS LIVEHLPGRT DNEIKNYWNS HLRRKVDSLR 120 IPSDEKLPQA VVELAKKGTQ VKHITKRGRS KRKIITRVSN STNENIEFDH FDDQMLWHDD 180 IMLMDDNYEV LDQDFITNCL WDGQGENLEI TDDNNNNNEI LREDNYGKWD WEYLSEILNN 240 EICGNSTKEA EQDNNNNNNI MSLCDINDNV QNCMNKEATQ ENIDPMQSDL VAWLLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-23 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis mainly in the root (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:15923334, ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen deficiency, sucrose and UV LIGHT (PubMed:17053893, PubMed:9839469). Triggered by HY5 in response to light and UV-B (PubMed:19895401). {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015078926.1 | 0.0 | transcription factor MYB14-like | ||||
Swissprot | O22264 | 1e-68 | MYB12_ARATH; Transcription factor MYB12 | ||||
TrEMBL | M1AB81 | 1e-173 | M1AB81_SOLTU; Uncharacterized protein | ||||
STRING | Solyc06g009710.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 1e-70 | myb domain protein 12 |