PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g002440.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 302aa    MW: 34724.4 Da    PI: 9.6195
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g002440.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.73.8e-17141231199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k++++s+v +  +l lp +f+++h  + ++++++ l de+g ++e  +   +k+ +  l++GW+ F+ +++L++gD +vF+l++ ++f  +
  Sopen06g002440.1 141 FIKTMVRSHVYSCFWLGLPTRFCQDHL-P-KSTVDVLLVDEEGLEYEALF--IGKRTG--LSGGWRAFALDHKLDDGDALVFELVEPTKF--K 225
                       89*********************9995.3.3789****************..555544..***********************9876666..8 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v ++r+
  Sopen06g002440.1 226 VYIVRA 231
                       888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-21133234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-24135237IPR015300DNA-binding pseudobarrel domain
CDDcd100172.66E-24139230No hitNo description
SMARTSM010197.4E-23141232IPR003340B3 DNA binding domain
PfamPF023622.3E-15141231IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239141232IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MANDKTNSYE EVRRQRVLDN KKRFEDLGIL NISKNLSDIT KSEKKSDYKT ELRRVRQKAN  60
DVYLSEPRRS ARARNPVPTY RDEIDIELPS LRKRSKFSSS WASYLARPLE EVKVASYEEK  120
VQALKCAEKL QSNLQSDKPF FIKTMVRSHV YSCFWLGLPT RFCQDHLPKS TVDVLLVDEE  180
GLEYEALFIG KRTGLSGGWR AFALDHKLDD GDALVFELVE PTKFKVYIVR ASQCSSEVDK  240
PEAEKEESEA EETPKSETKK KKKSSNKPEV PTIAKEEVSV VVTSATRRST RRKVEKHHSV  300
GM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0139570.0BT013957.1 Lycopersicon esculentum clone 132981R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077400.10.0putative B3 domain-containing protein At5g58280
RefseqXP_015077401.10.0putative B3 domain-containing protein At5g58280
SwissprotQ9FHB23e-71Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLK4C3D40.0K4C3D4_SOLLC; Uncharacterized protein
STRINGSolyc06g007530.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125102022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.17e-73B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]