PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g034530.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 327aa    MW: 35874.2 Da    PI: 5.9327
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g034530.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.32.1e-18229262134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C++C  tkTp+WR gp g+ktLCnaCG++y++ +
  Sopen05g034530.1 229 CQHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 262
                       *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169927.6E-742316IPR016679Transcription factor, GATA, plant
SMARTSM004018.5E-17223273IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.556223259IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-15227286No hitNo description
Gene3DG3DSA:3.30.50.105.7E-15227260IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.92E-15228275No hitNo description
PfamPF003205.0E-16229262IPR000679Zinc finger, GATA-type
PROSITE patternPS003440229254IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGSNVVDEID CGSFFDHIDD LIDFPLENEN VGLSSTDCKD FPSIWNDPLP DSDSLFSGSH  60
RNSASDLSAE LSVPYEDIVQ LEWLSTFVED SFSGGGLTLG KENIPVEKEP SSQGKFQTSS  120
PVSVLESSSS SSSSFSSSGE KTLPLSPCHR GPQRARTKRP RPTTFNPFPV FVAPVVPTES  180
ENFAESPMKK ILKPAEPEQK KKKKIKFSIP LAPVETNQNP VAQQAVRKCQ HCEITKTPQW  240
RAGPMGPKTL CNACGVRYKS GRLFPEYRPA ASPTFVPALH SNSHKKVLEM RTTIVPDNDI  300
IARTSSPAIA NQPEFNPSNV SVEEEHK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157161KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015076768.10.0GATA transcription factor 8-like
RefseqXP_015076769.10.0GATA transcription factor 8-like
TrEMBLA0A3Q7GQX20.0A0A3Q7GQX2_SOLLC; GATA transcription factor
STRINGSolyc05g056120.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.25e-41GATA family protein