PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g027060.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 475aa    MW: 53686.7 Da    PI: 9.9675
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g027060.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.11.8e-23209266258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                       + +++WrKYGqK +kgs+f r+YY+C+++ +C++kk++e+ ++d++++ +  +geHnh
  Sopen05g027060.1 209 NEKWAWRKYGQKYIKGSPFQRNYYKCSTSkHCEAKKQIEKISKDENIFLVSCSGEHNH 266
                       5689**********************9988**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-23200269IPR003657WRKY domain
PROSITE profilePS5081126.578203269IPR003657WRKY domain
SuperFamilySSF1182901.14E-20205269IPR003657WRKY domain
SMARTSM007748.8E-22208268IPR003657WRKY domain
PfamPF031066.8E-19211266IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MYLLFKYAYP KDSEYGKFTI HYSMETTSGI ITSALGQAIT FRVGGVNQPI RDIVDEYVRE  60
KAEAYGDAVL TDIFIRVYYD QNLSSVEMNI SNDQIARLIA ESVVSDEVYD HIAVQKIEYR  120
KPKYLKHITR LKSNCKERRS FIVVDTQTIL VESDTDQIEK VHMPYAVGFV VVKPGSAPSK  180
EQTPLTQSRT RKNHSIMLTY ESSQEELTNE KWAWRKYGQK YIKGSPFQRN YYKCSTSKHC  240
EAKKQIEKIS KDENIFLVSC SGEHNHYPPM SRRYLSSCKN NSKLKLPKGI NISPKESIFN  300
ASSSSSKRVK HSTDVASPII VTKPPLEIGS KKKMVVAVVH NIGDGEEKRL FALLFSFFRS  360
SASGTPAGYL TPDALGNPVT MGMVGSPPQH QPLLLRGNFI GLRSHLIPIP REKFPNLQAR  420
QPTKTIAFEK FPNLQARKPT KTIVFGHQRE RGPILALCRG FVGLIDSIPE SHNLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-122062661271WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.13e-25WRKY DNA-binding protein 27