PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g025200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | SAP | ||||||||
Protein Properties | Length: 702aa MW: 77384.2 Da PI: 6.5946 | ||||||||
Description | SAP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SAP | 55.4 | 9.6e-18 | 15 | 66 | 27 | 78 |
SAP 27 gesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfq 78 ge ++s++ +r n+vwpePf+e la vaidas+slGrlaaa+ala ++q Sopen05g025200.1 15 GEGPSSSRRGRRVGNDVWPEPFVEDLALLVAIDASHSLGRLAAAQALALIYQ 66 22233444456799************************************98 PP | |||||||
2 | SAP | 477.6 | 8.1e-146 | 113 | 411 | 139 | 439 |
SAP 139 padvdedndadalsCrclalsdkylaaGfadGavrlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaa 231 + +++++n++d+l Cr+lalsd++laaGf++G+v+lf l rlh+st++p+hrdrlGrfsravsGi++sd +lvfa+ldGdihv vi aa Sopen05g025200.1 113 NDNNNNNNNNDSLFCRRLALSDHHLAAGFSNGSVQLFFLPRRLHLSTYHPHHRDRLGRFSRAVSGIILSDVQLVFASLDGDIHVVVIGD--AA 203 233456677899***************************************************************************98..78 PP SAP 232 aarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrl 324 ++rra+lGdvvndGalvdf+Gs++WwvGlyaGvpGrafhiW+ eteelvfvGG ltdPea+mGWh+lte+te+vGr+rvt retavaCtsl+l Sopen05g025200.1 204 PPRRAHLGDVVNDGALVDFTGSDQWWVGLYAGVPGRAFHIWNRETEELVFVGGELTDPEALMGWHLLTEITEIVGRIRVTTRETAVACTSLQL 296 ********************************************************************************************* PP SAP 325 vvfdlrnqgvvlreeeerrGlivssldasneayvvvdsrGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyaggvlrvWeiekkeg 416 +v+dl+nqg+++r + +rrG+iv+s+da+ne++v+vd+rG+a+vrr++nlee +rf+vrg qrgv+gC+nggy+ ++ g v+rvW+ie+ + Sopen05g025200.1 297 MVIDLQNQGIIIRAQPSRRGIIVASFDAYNETLVAVDTRGMANVRRADNLEERSRFTVRGaNQRGVVGCINGGYGFMWLGNVVRVWDIENGN- 388 ************************************************************99***************************976. PP SAP 417 ylyslrervgevnalvaddrhva 439 ylys+ er+g+vna++ad+r Sopen05g025200.1 389 YLYSFGERIGDVNAIIADERNTQ 411 *******************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF50978 | 2.2E-7 | 106 | 336 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 1.5E-4 | 295 | 415 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SuperFamily | SSF50978 | 2.2E-7 | 378 | 404 | IPR017986 | WD40-repeat-containing domain |
SuperFamily | SSF56672 | 4.89E-7 | 511 | 647 | No hit | No description |
Pfam | PF07727 | 2.7E-50 | 511 | 639 | IPR013103 | Reverse transcriptase, RNA-dependent DNA polymerase |
CDD | cd09272 | 1.00E-20 | 645 | 696 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009554 | Biological Process | megasporogenesis | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0030163 | Biological Process | protein catabolic process | ||||
GO:0046622 | Biological Process | positive regulation of organ growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 702 aa Download sequence Send to blast |
MSSSQSPPSS LGGGGEGPSS SRRGRRVGND VWPEPFVEDL ALLVAIDASH SLGRLAAAQA 60 LALIYQGKRL TGLFNMASSV TLRYALAKPN KAYAYNTLHF VPQNNVEGDD DDNDNNNNNN 120 NNDSLFCRRL ALSDHHLAAG FSNGSVQLFF LPRRLHLSTY HPHHRDRLGR FSRAVSGIIL 180 SDVQLVFASL DGDIHVVVIG DAAPPRRAHL GDVVNDGALV DFTGSDQWWV GLYAGVPGRA 240 FHIWNRETEE LVFVGGELTD PEALMGWHLL TEITEIVGRI RVTTRETAVA CTSLQLMVID 300 LQNQGIIIRA QPSRRGIIVA SFDAYNETLV AVDTRGMANV RRADNLEERS RFTVRGANQR 360 GVVGCINGGY GFMWLGNVVR VWDIENGNYL YSFGERIGDV NAIIADERNT QAYNFNPIYN 420 YKRVAGNVHG TPIDSVLNER GDQMKKDADD NVNNVGAIAD SPDVGNGSVN FAGPFNEEAS 480 GDYEPLIYEE AAIEPSWQAA MTQEFEALHA NHTWILSPLP VGKRAIGCKW VYKVKHKADG 540 SIERFKAQLV VKDYTQQAEI DYVETFSPVL KMTIVRSLIA IAVKRGWDIS QLDVNNAFLH 600 GDLHEKVYME APPGLMVDTP GLVCKLNKSL YGLKQASRHH GCTVRAFCDS EWAVCLDSRI 660 SASGYIVLLG NTPISWKSKK QETTSLSSSQ AEYRALRKVV VK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015075540.1 | 0.0 | transcriptional regulator STERILE APETALA-like | ||||
Swissprot | Q9FKH1 | 1e-120 | SAP_ARATH; Transcriptional regulator STERILE APETALA | ||||
TrEMBL | A0A3Q7GLE3 | 0.0 | A0A3Q7GLE3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g041220.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4099 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35770.1 | 1e-118 | SAP family protein |
Publications ? help Back to Top | |||
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