PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g025010.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 271aa    MW: 31653.7 Da    PI: 4.5339
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g025010.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.78.5e-13589191
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                      ffkv++p+ ++k+  l lp  +++ ++g+   +  + l+d+ g+ W + +  +k ++ ++++ GW++  k+n ++ gDf++F +dg++ f 
  Sopen05g025010.1  5 FFKVFIPETNGKR--LKLPTAYTDYMDGI--LPSNIFLRDRFGNMWPIGV--TKAGKDIYFEYGWEKIIKDNIVELGDFFIFDFDGTRIFD 89
                      899**88877775..9******9666777..6668***************..*******************************99876664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-16398IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.111396IPR003340B3 DNA binding domain
CDDcd100174.92E-9585No hitNo description
SMARTSM010191.3E-8596IPR003340B3 DNA binding domain
PfamPF023622.1E-10588IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.7E-15598IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-4218270IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MNMGFFKVFI PETNGKRLKL PTAYTDYMDG ILPSNIFLRD RFGNMWPIGV TKAGKDIYFE  60
YGWEKIIKDN IVELGDFFIF DFDGTRIFDF TLLGRNGCVK KGVGSLKINV KEEEVEEMNV  120
EHQKSVDPKE NTRARDSKNI SSFDVMDENT LVEEKEDEQK EYENREDVPE EEGEKEEEPD  180
EYKEGEEDKE RTGMLKKMTT RSKGDNLLQI YSEVEVELSQ KNAFFVTKIR PNRRNHLYVP  240
ADVVRDYQLE LPSCMTIRDS AGREFEAKLK I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-1159811104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027772610.11e-122B3 domain-containing protein At5g60142-like
TrEMBLA0A3Q7GLC73e-91A0A3Q7GLC7_SOLLC; Uncharacterized protein
STRINGSolyc05g041100.1.11e-92(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.14e-18B3 family protein