PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen05g016700.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ZF-HD

Protein Properties

Length: 2766aa MW: 311983 Da PI: 8.3568

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen05g016700.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	38.2	3.3e-12	2682	2716	22	57
ZF-HD_dimer 22 vDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 DGC+Ef+++ g++gt++a Ca CgC R+FHR ++ Sopen05g016700.1 2682 WDGCREFVKK-GDDGTKQAYICANCGCLRSFHRMNS 2716 6******8.999*****************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03732	9.0E-12	150	240	IPR005162	Retrotransposon gag domain
CDD	cd00303	2.39E-15	578	672	No hit	No description
SuperFamily	SSF56672	4.23E-138	850	1282	No hit	No description
Gene3D	G3DSA:3.10.10.10	4.2E-19	856	1021	No hit	No description
CDD	cd01647	8.25E-74	892	1087	No hit	No description
Pfam	PF00078	5.6E-22	924	1086	IPR000477	Reverse transcriptase domain
CDD	cd09274	1.23E-57	1181	1299	No hit	No description
PROSITE profile	PS50994	25.915	1450	1614	IPR001584	Integrase, catalytic core
SuperFamily	SSF53098	8.22E-45	1459	1608	IPR012337	Ribonuclease H-like domain
Gene3D	G3DSA:3.30.420.10	1.0E-60	1461	1618	IPR012337	Ribonuclease H-like domain
Pfam	PF00665	1.0E-19	1462	1570	IPR001584	Integrase, catalytic core
SuperFamily	SSF57756	1.73E-5	2117	2151	IPR001878	Zinc finger, CCHC-type
Gene3D	G3DSA:4.10.60.10	4.1E-4	2133	2173	IPR001878	Zinc finger, CCHC-type
SMART	SM00343	0.0041	2134	2150	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS50158	10.279	2135	2150	IPR001878	Zinc finger, CCHC-type
SuperFamily	SSF56672	2.52E-45	2174	2323	No hit	No description
Gene3D	G3DSA:3.30.420.10	1.5E-29	2502	2659	IPR012337	Ribonuclease H-like domain
PROSITE profile	PS50994	19.577	2503	2666	IPR001584	Integrase, catalytic core
SuperFamily	SSF53098	9.86E-42	2503	2662	IPR012337	Ribonuclease H-like domain
Pfam	PF00665	3.8E-10	2512	2623	IPR001584	Integrase, catalytic core
Pfam	PF04770	1.1E-11	2682	2716	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-4	2683	2718	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0015074	Biological Process	DNA integration
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 2766 aa Download sequence Send to blast
MPNTRRGREP LFPYDHELER TLRNMNRNLG INDEDPNQNI PAPVDVHGQL LPDAPGEHQQ 60 RGQNPVPRPQ AYYRGYDVIA DSDGPLVLPP LPTGHTFVVT SSLMQMLTAR GLFSGLPSED 120 PHAHIAKVRA VCKSCVGRPD LDLDVIGLRV FPLSLTGEAA IWFTELPYNS IFTWNQLRDV 180 FLARYYPVSK KLNHKDRVNN FVALPGESVS SSWDRFTSFL RSVPNHRIDD ESLKEHFYRG 240 QDDNKKAVLD TIAGGSYGEC PYAEIAKKLE KISRNNKAWS NRKSDTGRNT FAVQSTHNPT 300 TDEIQKINAV NYLSKQPPQN DECYYEEDSY AVNEQMGGFR PSAQGSNQEN WRQGQGNQGR 360 NYGNYNREGH YVRDGNYNRD NNFNRCNYGN RNDRNGPYVP PQNREVSHRD GGGSMSRVED 420 MLHKMMRRFD ASDEHNKELR NDLAGIGQKV DTHAISIKQL ELQLAQLSAT VNTRQPGTLP 480 SNTVQNPKND GHCMAITTRG GKQTIDQPMP SDEKKQLSIN VPLVEALEQM PGYAKFMKDL 540 VTKKRSVTFE DDDRMQHCSA IATRSLVQKK EDPGAFTIPC TIGLLHFAKA LCDLGASINL 600 MPLSIYKKLG LGDPKPTAMR LLMADRTVKR PIGILHDVLV KVESFIFPAD FVILDCEVDF 660 EVPIILGRPF LATGRALVDM EKGQMKFRLN NEEVTFNVCR SMRQSGELQS VSAISYNMGE 720 TSETQIEERL GVEALAAVIM NFDSDCIEEY ESLVAALDRG DVRFKPKKYE LDMKNRESPP 780 AKPSIEEAPK VELKALPPHL KYEFLGNGDT LPVIVASDLD EQQVQSLVKV LKRFKRAIGW 840 TIADIIGIPP GICSHKIQLM PDHKPSIEHQ RRLNPPMQEV VKKEIIKWLD AGVIYPIADS 900 SWVCPVQCVP KKGGMTVVPN EKNELVPMRP VTGWRVCMDY RKLNSWTEKD HFPMPFMDQM 960 LDRLAGKGWY CFLDGYSGYN QISIAPEDQE KTTFTCPYGT FAFRRMPFGL CNAPATFQRC 1020 MMSIFSDMVE DTIEVFMDDF SVVGDSFERC LNNLSEVLKR CEDCNLVLNW EKCHFMVKEG 1080 IVLGHRISEK GIEVDRAKVE VIERLPPPIS VKGVRSFLGH AGFYRRFIKD FSKIAHPLCK 1140 LLEKDCKYCF DESCLKAFGE LKEKLVSAPI IISPDWSSPF EVMCDASGVA LGVVLGQRKN 1200 KILHPIYYAS KALNEAQKNY TVTEQELLAV VFAFEKFRSY LLGTRVIVHT DHSALRYLMA 1260 KKDAKPRLIR WVLLLQEFDF EVLDRKGTEN QVADHLSRLE DEAMRELGDK TDIDDTFPDE 1320 HVLAASQDLI PWFADFANYL ASDIVPSDLS FHQRKKFMYD VKKFFWDEPY LYRSCADGLI 1380 RRCVPECEML SVLEACHSSP VGGHHSGIRT AHKILQCGYY WPTLHQDAHG FAKACDKCQR 1440 DGGISRKQEL PLNPILVIEL FDVWGIDFMG PFVSSHGMKY ILVAVDYVSK WVEAIALANN 1500 EGKSVTAFLK KNIFSRFGTP RAIISDGGSH FCNRLFKGLL EKYGVRHNVA TPYHPQTSGQ 1560 VEVSNREIKQ ILSKTVNASR TDWSRRLDDA LWAYRTAYKT PIGMSPYQLV YGKACHLPVE 1620 LEHKAMWAMK KLKMDWSEAA EHRLNGLNEL DEFRLKAYES SALYKEKMKK YHDNKIEKRE 1680 FMVGDLVLLF NSRLRVFPGK LKSKWTGPYT VTQLFPHGAV ELETKEGVRF KVLSTMAPKQ 1740 DRTYARGRSK SVAPCARLII GSDDERDPEY VPPRTSTPSR AARAPRATPK TVASGVVTAS 1800 QSDEERTLTG TPCGSTTNEE GASGSLGMVR TRATTAPTPT PARQDASEPA TGAVARRGVV 1860 ARGRGRGRGR TSSRGRGQAP GPASTRAVTP PPTDEVEREG EEGENEQVQN EELPPQPTPE 1920 MINQVLAYLS GLSDQGQTPP VFSAPAPQVP RVQHAAAVAP RMDASLEIGT FPRLTTGPIM 1980 TSDQHELFTI FLKLKPPVFK GAESEDAYDF LVICHELLHK MGIVERFGVE FVTYQFQGNA 2040 KMWWRSYVEC QPAEAPPMTW GSFSSLFMEK FADFILTGSC YSKILSGGYP ARPIQSSLQA 2100 VAGGPSQTSQ HSSEFGGYPQ TSSFPQRPML ESRECYGCGE TGHIRRYCPK QSYRPPIVRG 2160 RGGHGRGRHS GGRGGRVSKD GVMVDPSKIE AVKNWVRPTN VTEVRSFVGL ASYYRRFVKG 2220 FSSVASQLTN LTKQNVPFVW SDECEESFQN LKTLLTTAPI LTLPVEGKNF IVYCDASYSG 2280 LGAVLMQEKN VIAYASRQLK KDLNLRQRRW MELLKDYDIT ILYHPGKANV AADALSRKAG 2340 SMGSLAHLQV CRRPLAREVQ TLANDFMRLE VLEKGGFLAC VEARSSFLDK IKGKQFTDEK 2400 VIQIRDKVLR GEAKEAKIDE EGVLRINGRV CVPRIDDLIH TILTEAHSSG YSIHPGATKM 2460 YRDLKQHFWW SRMKRDIVYF VAQCPNCQQV KYEHQRPGGT LQRMPIPEWK WERIATDFVV 2520 SLPKTLGKFD SIWVIVDRLT KSAHFIPVKV TCNAEKLAKP YISEIVRLHG VPLSIISDRG 2580 TQFTSKFWRT LHAELGTKLD LSTAFHPQTD GQSERTIQVL EDMLRACVIE FGGHWDNFLP 2640 LAEFSYNNSY HSSIDMAPFE ALYGRRCRSP IGWFDAFEVR PWDGCREFVK KGDDGTKQAY 2700 ICANCGCLRS FHRMNSQSLY RVEILRSRFF HPHGGGNAPI YFSSFHVSIC AISVHQKTRA 2760 LQLSLT

Sequence ? help Back to Top

Protein Sequence Length: 2766 aa Download sequence Send to blast

MPNTRRGREP LFPYDHELER TLRNMNRNLG INDEDPNQNI PAPVDVHGQL LPDAPGEHQQ  60
RGQNPVPRPQ AYYRGYDVIA DSDGPLVLPP LPTGHTFVVT SSLMQMLTAR GLFSGLPSED  120
PHAHIAKVRA VCKSCVGRPD LDLDVIGLRV FPLSLTGEAA IWFTELPYNS IFTWNQLRDV  180
FLARYYPVSK KLNHKDRVNN FVALPGESVS SSWDRFTSFL RSVPNHRIDD ESLKEHFYRG  240
QDDNKKAVLD TIAGGSYGEC PYAEIAKKLE KISRNNKAWS NRKSDTGRNT FAVQSTHNPT  300
TDEIQKINAV NYLSKQPPQN DECYYEEDSY AVNEQMGGFR PSAQGSNQEN WRQGQGNQGR  360
NYGNYNREGH YVRDGNYNRD NNFNRCNYGN RNDRNGPYVP PQNREVSHRD GGGSMSRVED  420
MLHKMMRRFD ASDEHNKELR NDLAGIGQKV DTHAISIKQL ELQLAQLSAT VNTRQPGTLP  480
SNTVQNPKND GHCMAITTRG GKQTIDQPMP SDEKKQLSIN VPLVEALEQM PGYAKFMKDL  540
VTKKRSVTFE DDDRMQHCSA IATRSLVQKK EDPGAFTIPC TIGLLHFAKA LCDLGASINL  600
MPLSIYKKLG LGDPKPTAMR LLMADRTVKR PIGILHDVLV KVESFIFPAD FVILDCEVDF  660
EVPIILGRPF LATGRALVDM EKGQMKFRLN NEEVTFNVCR SMRQSGELQS VSAISYNMGE  720
TSETQIEERL GVEALAAVIM NFDSDCIEEY ESLVAALDRG DVRFKPKKYE LDMKNRESPP  780
AKPSIEEAPK VELKALPPHL KYEFLGNGDT LPVIVASDLD EQQVQSLVKV LKRFKRAIGW  840
TIADIIGIPP GICSHKIQLM PDHKPSIEHQ RRLNPPMQEV VKKEIIKWLD AGVIYPIADS  900
SWVCPVQCVP KKGGMTVVPN EKNELVPMRP VTGWRVCMDY RKLNSWTEKD HFPMPFMDQM  960
LDRLAGKGWY CFLDGYSGYN QISIAPEDQE KTTFTCPYGT FAFRRMPFGL CNAPATFQRC  1020
MMSIFSDMVE DTIEVFMDDF SVVGDSFERC LNNLSEVLKR CEDCNLVLNW EKCHFMVKEG  1080
IVLGHRISEK GIEVDRAKVE VIERLPPPIS VKGVRSFLGH AGFYRRFIKD FSKIAHPLCK  1140
LLEKDCKYCF DESCLKAFGE LKEKLVSAPI IISPDWSSPF EVMCDASGVA LGVVLGQRKN  1200
KILHPIYYAS KALNEAQKNY TVTEQELLAV VFAFEKFRSY LLGTRVIVHT DHSALRYLMA  1260
KKDAKPRLIR WVLLLQEFDF EVLDRKGTEN QVADHLSRLE DEAMRELGDK TDIDDTFPDE  1320
HVLAASQDLI PWFADFANYL ASDIVPSDLS FHQRKKFMYD VKKFFWDEPY LYRSCADGLI  1380
RRCVPECEML SVLEACHSSP VGGHHSGIRT AHKILQCGYY WPTLHQDAHG FAKACDKCQR  1440
DGGISRKQEL PLNPILVIEL FDVWGIDFMG PFVSSHGMKY ILVAVDYVSK WVEAIALANN  1500
EGKSVTAFLK KNIFSRFGTP RAIISDGGSH FCNRLFKGLL EKYGVRHNVA TPYHPQTSGQ  1560
VEVSNREIKQ ILSKTVNASR TDWSRRLDDA LWAYRTAYKT PIGMSPYQLV YGKACHLPVE  1620
LEHKAMWAMK KLKMDWSEAA EHRLNGLNEL DEFRLKAYES SALYKEKMKK YHDNKIEKRE  1680
FMVGDLVLLF NSRLRVFPGK LKSKWTGPYT VTQLFPHGAV ELETKEGVRF KVLSTMAPKQ  1740
DRTYARGRSK SVAPCARLII GSDDERDPEY VPPRTSTPSR AARAPRATPK TVASGVVTAS  1800
QSDEERTLTG TPCGSTTNEE GASGSLGMVR TRATTAPTPT PARQDASEPA TGAVARRGVV  1860
ARGRGRGRGR TSSRGRGQAP GPASTRAVTP PPTDEVEREG EEGENEQVQN EELPPQPTPE  1920
MINQVLAYLS GLSDQGQTPP VFSAPAPQVP RVQHAAAVAP RMDASLEIGT FPRLTTGPIM  1980
TSDQHELFTI FLKLKPPVFK GAESEDAYDF LVICHELLHK MGIVERFGVE FVTYQFQGNA  2040
KMWWRSYVEC QPAEAPPMTW GSFSSLFMEK FADFILTGSC YSKILSGGYP ARPIQSSLQA  2100
VAGGPSQTSQ HSSEFGGYPQ TSSFPQRPML ESRECYGCGE TGHIRRYCPK QSYRPPIVRG  2160
RGGHGRGRHS GGRGGRVSKD GVMVDPSKIE AVKNWVRPTN VTEVRSFVGL ASYYRRFVKG  2220
FSSVASQLTN LTKQNVPFVW SDECEESFQN LKTLLTTAPI LTLPVEGKNF IVYCDASYSG  2280
LGAVLMQEKN VIAYASRQLK KDLNLRQRRW MELLKDYDIT ILYHPGKANV AADALSRKAG  2340
SMGSLAHLQV CRRPLAREVQ TLANDFMRLE VLEKGGFLAC VEARSSFLDK IKGKQFTDEK  2400
VIQIRDKVLR GEAKEAKIDE EGVLRINGRV CVPRIDDLIH TILTEAHSSG YSIHPGATKM  2460
YRDLKQHFWW SRMKRDIVYF VAQCPNCQQV KYEHQRPGGT LQRMPIPEWK WERIATDFVV  2520
SLPKTLGKFD SIWVIVDRLT KSAHFIPVKV TCNAEKLAKP YISEIVRLHG VPLSIISDRG  2580
TQFTSKFWRT LHAELGTKLD LSTAFHPQTD GQSERTIQVL EDMLRACVIE FGGHWDNFLP  2640
LAEFSYNNSY HSSIDMAPFE ALYGRRCRSP IGWFDAFEVR PWDGCREFVK KGDDGTKQAY  2700
ICANCGCLRS FHRMNSQSLY RVEILRSRFF HPHGGGNAPI YFSSFHVSIC AISVHQKTRA  2760
LQLSLT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ol8_A	1e-68	843	1298	44	475	Reverse transcriptase/ribonuclease H
4ol8_B	1e-68	843	1298	44	475	Reverse transcriptase/ribonuclease H
4ol8_E	1e-68	843	1298	44	475	Reverse transcriptase/ribonuclease H
4ol8_F	1e-68	843	1298	44	475	Reverse transcriptase/ribonuclease H

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1856	1866	RGVVARGRGRG
2	2296	2308	RQLKKDLNLRQRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-07	homeobox protein 22