PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g004950.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 279aa    MW: 32594.4 Da    PI: 6.7864
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g004950.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-182673148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT eEd ll++++  +G g+W++ a++ g++Rt+k+c++rw++yl
  Sopen05g004950.1 26 RGPWTLEEDNLLIHYISTHGEGRWNALAKCAGLKRTGKSCRLRWLNYL 73
                      89********************************************97 PP
2Myb_DNA-binding52.89.1e-1779122146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Sopen05g004950.1  79 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 122
                       7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4182173IPR017930Myb domain
SuperFamilySSF466891.76E-3123120IPR009057Homeodomain-like
SMARTSM007171.6E-162575IPR001005SANT/Myb domain
PfamPF002491.9E-172673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-242780IPR009057Homeodomain-like
CDDcd001672.34E-112873No hitNo description
PROSITE profilePS5129425.75174128IPR017930Myb domain
SMARTSM007172.7E-1578126IPR001005SANT/Myb domain
PfamPF002499.1E-1679122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2381127IPR009057Homeodomain-like
CDDcd001672.57E-1083122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSNNNNNNNN NNNILSNKDE LFELRRGPWT LEEDNLLIHY ISTHGEGRWN ALAKCAGLKR  60
TGKSCRLRWL NYLKPDIKRG NLTPQEQLLI LELHSKWGNR WSKIAQHLPG RTDNEIKNYW  120
RTRVQKQARQ LKVDSNSKKF VEAIKNLWVP RLLEKMEQCS SSSSIEKKLP NLPLTNNNQE  180
PCTKHNKSHD IANNNNTTWG SLENSLDSMN VFNENMNSIH QDDECYHVGS FIQQPEHLTY  240
QEMSISECEV AEADWLNDEG SLWNMDEFWQ FKKLGDVDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-252312824128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075755.20.0transcription factor MYB62
SwissprotQ9C9G72e-86MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A3Q7GB930.0A0A3Q7GB93_SOLLC; Uncharacterized protein
STRINGSolyc05g009230.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.13e-87myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]