PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g003470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ZF-HD | ||||||||
Protein Properties | Length: 298aa MW: 32947.4 Da PI: 7.6139 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 110.3 | 1e-34 | 51 | 109 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 ++v YkeClkNhAas+GghavDGCgEfmps++++ +++ +lkCaACgCHRnFHRre+++ Sopen05g003470.1 51 TAVIYKECLKNHAASIGGHAVDGCGEFMPSPESTpSDPISLKCAACGCHRNFHRREPSD 109 6799***************************9999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 6.0E-30 | 53 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.6E-29 | 53 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.805 | 55 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.3E-31 | 55 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-30 | 166 | 235 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.33E-19 | 167 | 234 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.2E-26 | 173 | 230 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MELTYSINPT PTPSSTKTPD SEVDTPPLIK PLSFTNGNNH HSHHNQSPPC TAVIYKECLK 60 NHAASIGGHA VDGCGEFMPS PESTPSDPIS LKCAACGCHR NFHRREPSDD SSPPAHFIDF 120 RRHIFPPIKR FSPSPTPSPS LSPSLSPPPL PSLFQPQPVT PTGFLKSENP NGRKRFRTKF 180 TAEQKEKMHS FSEKLGWKLQ KCDEAAVDEF CNEIGVGKGV LRVWMHNNKN TFGKKDYQIS 240 NNSSRDHSFE NKNGFNINGT ASSNEEEDQH RNNNNDNSTT SNCELHLHIS TNGSSSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-23 | 174 | 231 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015074968.1 | 0.0 | zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9LXG0 | 1e-59 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A3Q7GCL4 | 1e-177 | A0A3Q7GCL4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g007580.1.1 | 1e-177 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 2e-56 | zinc finger homeodomain 1 |
Publications ? help Back to Top | |||
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