PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g034630.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family DBB
Protein Properties Length: 296aa    MW: 32966.9 Da    PI: 6.8947
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g034630.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.13.1e-07443538
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                       C+ ++++e++ fC  ++  lC++C    H+       H+
  Sopen04g034630.1  4 QCDVCNNNEASVFCVADEAALCDSCDHRVHHAnklaskHQ 43
                      7***************************964446666676 PP
2zf-B_box29.12e-095492238
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                      + ++C+ ++e ++ lfC++++  lC++C +++Hk   Ht
  Sopen04g034630.1 54 QIPVCDICQERRAFLFCQQDRAILCRECDVSIHKAneHT 92
                      6789*****************************878865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.907147IPR000315B-box-type zinc finger
CDDcd000211.37E-7347No hitNo description
SMARTSM003369.2E-9447IPR000315B-box-type zinc finger
PfamPF006431.6E-5443IPR000315B-box-type zinc finger
SMARTSM003361.3E-1453100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.60853100IPR000315B-box-type zinc finger
PfamPF006437.8E-85592IPR000315B-box-type zinc finger
CDDcd000211.47E-1156100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MKIQCDVCNN NEASVFCVAD EAALCDSCDH RVHHANKLAS KHQRFSLIQP SPKQIPVCDI  60
CQERRAFLFC QQDRAILCRE CDVSIHKANE HTQKHNRFLL TGVKISANSS LYTSSESVSA  120
TSCSANQDSV TNLNKSQICT KKTLPVSGSV PQQQVSVAAN IGENSYTSSI SEYLEMLPGW  180
HVEELLNAST IPTNGFCKIG DNDVFPIWDS EIESSMNSFS PENIGIWVPP APTPQKNQNQ  240
VFPQNINFGG QIEFKNMKED TSNKSSRKWR DDNSFAVPQI SPSSSSISFK RSRTLW
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072170.10.0B-box zinc finger protein 21-like
SwissprotQ9LQZ72e-82BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A3Q7GB830.0A0A3Q7GB83_SOLLC; Uncharacterized protein
STRINGSolyc04g081020.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14632364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.18e-77salt tolerance homolog2
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]