PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen04g030260.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GATA

Protein Properties

Length: 262aa MW: 29350.1 Da PI: 8.5368

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen04g030260.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.5	5.9e-16	183	218	1	34
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C +Cgt++ Tp++Rrgpdg++ LCnaCGl ++ kg Sopen04g030260.1 183 CIHCGTSSkaTPMMRRGPDGQRNLCNACGLTWANKG 218 99*******************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	4.4E-6	57	92	IPR010399	Tify domain
PROSITE profile	PS51320	11.685	57	92	IPR010399	Tify domain
Pfam	PF06200	3.3E-8	63	91	IPR010399	Tify domain
Pfam	PF06203	5.1E-11	124	166	IPR010402	CCT domain
PROSITE profile	PS51017	11.32	124	166	IPR010402	CCT domain
SMART	SM00401	1.2E-10	177	230	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	9.948	177	223	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	3.52E-11	179	227	No hit	No description
Gene3D	G3DSA:3.30.50.10	3.5E-14	181	222	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	4.37E-12	182	221	No hit	No description
Pfam	PF00320	7.0E-14	183	218	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	183	210	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MNVDIHFSGD GEEVPAGNEK AVGNFPVGYE GRMDSVKVTM PHHTVCSASD VIALQNRETN 60 FDQLTISFRG KIYVFDGVTT QKVHSLFKLL GGYEYSPGTQ ALGLSSANQK DYVDHPVHCA 120 DPKRLESLIR FYEKRKKRCY EKKIRYGIRQ EVAFRMKRKN GLFARKGSTG PKQENIPSEE 180 TRCIHCGTSS KATPMMRRGP DGQRNLCNAC GLTWANKGIM RTLYKASYDN TELELENEDC 240 NETNYGAPQC SASHQVSSSV CQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	1e-136	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015073208.1	0.0	GATA transcription factor 25
Swissprot	Q9LRH6	2e-52	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A3Q7G5H4	1e-158	A0A3Q7G5H4_SOLLC; Uncharacterized protein
STRING	Solyc04g076530.2.1	1e-168	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14030	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.1	7e-44	ZIM-like 1

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]