PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g028400.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 599aa    MW: 67001.8 Da    PI: 4.5172
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g028400.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.86.2e-51331592128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                       ppGfrFhPtdeelv +yLk+k+ ++++ l ++i e+d+yk+eP+dLp  +k+k+++++w+fFs+rd+ky++g r+nra k+gyWkatgkd+ +
  Sopen04g028400.1  33 PPGFRFHPTDEELVLYYLKRKICRRRILL-DAIGETDVYKWEPEDLPdlSKLKTGDRQWFFFSPRDRKYPNGARSNRASKHGYWKATGKDRII 124
                       9*************************999.99**************96559999*************************************** PP

               NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ ++++vg+kktLvfykgrap ge+tdWvmhey++
  Sopen04g028400.1 125 TC-NSRAVGVKKTLVFYKGRAPVGERTDWVMHEYTM 159
                       **.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-5926182IPR003441NAC domain
PROSITE profilePS5100555.3932182IPR003441NAC domain
PfamPF023655.0E-2733158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MKVLMDSVAA AASSSPCKEM KVSECFGENS VFPPGFRFHP TDEELVLYYL KRKICRRRIL  60
LDAIGETDVY KWEPEDLPDL SKLKTGDRQW FFFSPRDRKY PNGARSNRAS KHGYWKATGK  120
DRIITCNSRA VGVKKTLVFY KGRAPVGERT DWVMHEYTMD EEELKRCQNV QDYYALYKVF  180
KKSGPGPKNG EQYGAPFREE DWLDDECLNA KVSVQPESPR DQENTAKNIN VVPAPDDAIE  240
ELLKRPFTVD NNFALEQFVQ EEDTESTLLN QSSRDVNLYN HCAVAGPSCQ QYNVKASFDL  300
TESGTSPLHL HEAPEVSSAP VNPEKPPYAL EEDFLEDFLE MDDLLVVEPN VQNFDYGTPN  360
GQVFDKPAGN LETLQFDDFD GLSEFDLYHD APSLLDNVGT PVVGQIAEPY MNNFVNGITY  420
PDSTTYMGAF QNDMMNNQQM RLNHENQINN QFWMHDERLG VFNPIEGDQS VVDQASSGVV  480
NDNNMANYPM GANQNLAKKD DGTQSWFSSN LWAFVDSIPT TPASAAESAL VVNRAFERMS  540
SFSRMKLNVG NMNVAAGNAS ATSSSSGKGK YGLCCISLLG VLCAFLWVVI GTSAKIAGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-473215915140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4375230.0KF437523.1 Solanum tuberosum putative membrane bound NAC transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074110.10.0NAC domain-containing protein 17-like
TrEMBLA0A3Q7G4620.0A0A3Q7G462_SOLLC; Uncharacterized protein
STRINGSolyc04g072220.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32122451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-120NAC domain containing protein 17