PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g026790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 255aa MW: 28786 Da PI: 9.7467 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.9 | 5.7e-16 | 14 | 102 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ffkv+ + s l++p f+ + +g+k e+ t++ + +W+v++ +++ ++ + + kGW+eFv+ ++L++gDf vF++ g+++f Sopen04g026790.1 14 FFKVM--VPGFHS-KLTIPPAFFPKLKGDKSEKGTII---KGKDTWNVEI--NRSEKGiISFDKGWEEFVQNHDLRVGDFAVFEHLGDMRF-- 96 77888..445555.59**********77877766777...6779******..888888899*************************99999.. PP EEEEE- CS B3 93 vvkvfr 98 v++++ Sopen04g026790.1 97 SVTLLD 102 777666 PP | |||||||
2 | B3 | 52.3 | 1.1e-16 | 168 | 243 | 14 | 89 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89 + +p +f++++ + +++t+tl+ +sg+s v l++++++++ +t+GW +F ++n+Lk+gD+++F+ld++++ Sopen04g026790.1 168 PYMHIPTEFCQSNALF--QNTTMTLTGPSGKSCPVSLRICNGGKTlyACITRGWHDFFSSNKLKVGDVCLFQLDRSKS 243 4589*********877..6679***************9999988888889***********************98743 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.238 | 11 | 104 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.32E-17 | 12 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.34E-15 | 12 | 102 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-19 | 12 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.3E-12 | 14 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-12 | 14 | 100 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-18 | 152 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.35E-17 | 153 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.3E-6 | 154 | 247 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.04E-15 | 154 | 243 | No hit | No description |
PROSITE profile | PS50863 | 10.856 | 155 | 255 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-14 | 169 | 243 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MQSSSSELPI SRRFFKVMVP GFHSKLTIPP AFFPKLKGDK SEKGTIIKGK DTWNVEINRS 60 EKGIISFDKG WEEFVQNHDL RVGDFAVFEH LGDMRFSVTL LDSTGCDKKL LEKSEVVPSQ 120 EKKKKVNSAQ PGTEKRKVEG DQPHYQCMKG SSEFTARIKE YNVRKRSPYM HIPTEFCQSN 180 ALFQNTTMTL TGPSGKSCPV SLRICNGGKT LYACITRGWH DFFSSNKLKV GDVCLFQLDR 240 SKSDSNSIAI DVRVL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 1e-180 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015072069.1 | 0.0 | B3 domain-containing protein REM9-like | ||||
TrEMBL | A0A3Q7G746 | 0.0 | A0A3Q7G746_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g064830.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8536 | 16 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 3e-25 | B3 family protein |