PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen04g022770.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 1027aa MW: 114878 Da PI: 7.547

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen04g022770.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.4	4.3e-19	853	902	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa+a+++a+++++g Sopen04g022770.1 853 RYRGVRERP-WGKWAAEIRDPY----KaARVWLGTFDTAEGAARAYDEAALRFRG 902 69**888.******76....35**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14244	2.0E-15	28	71	IPR029472	Gag-polypeptide of LTR copia-type
Pfam	PF14223	1.4E-8	85	231	No hit	No description
Pfam	PF07727	6.7E-36	550	660	IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamily	SSF56672	7.56E-6	550	649	No hit	No description
CDD	cd09272	8.11E-27	688	749	No hit	No description
SuperFamily	SSF54171	4.38E-21	853	911	IPR016177	DNA-binding domain
SMART	SM00380	5.0E-36	853	916	IPR001471	AP2/ERF domain
Pfam	PF00847	6.0E-12	853	902	IPR001471	AP2/ERF domain
CDD	cd00018	1.32E-33	853	912	No hit	No description
Gene3D	G3DSA:3.30.730.10	2.6E-31	853	911	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	25.422	853	910	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.9E-10	854	865	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.9E-10	876	892	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1027 aa Download sequence Send to blast
MAVDVSNEAA VAPSHSIEID HYHPLYLHPS DTSGSFLVSI QLTGPENYAI WSRSMRLALL 60 GKSKVSFVDG KHTREAFLSS LHDLWEKCNA IVLSWIINSI RKELLSSVIY ALNASKVWSN 120 LKERFDKVDG SRIHFLHTEI HSMSQGTSTV SDYFSRLREC WDKFDAIMSC PSCNCPESRK 180 YMQHFDYQRL LQFLTGLNES YAPSRSQILM MTPTPTINQA YFMVISEESQ RSLGKSVQNL 240 NINEGAAFYT SKGNFKPNSG GSGVQFRPST GQGHPEHNRS GFYIGHGNAA NFVNKHENPS 300 DMDGYAVNFS NALGTSSQSS HPSAPYFTPE QYNQILQMIG QNSETSGTAL SAGYVTSLKK 360 SGKFAPRSVP AVFLGYYLTR KGYKMYLLEE KSFTISRDVV FTEDVFFQHL STTFPPIFSP 420 PLCSTQYRPA ESIYVPHDHD SPPHALEVNP SIPPEAALVS VSTSVEPVRK SNRIPKPPIW 480 MKDYIYPTRT NVSCHFPISN YVNYDQISDS YISALAAYSA ILEPTSYSEA SSDPKWIAAM 540 QSQIAALMDN STWSIVDLPS GKSPIGCKWV YKIKHKANGE VERYKTRLVA KGFNQKEGLD 600 YTGTFSPISK TVIVQSVVAL AAAKKWFIYQ MDVHNAFLQG DIFEEVLSQF MHKPNQSHME 660 AALRVVRYVK AEPGFGLLMP SESSGKLVAY CDSYWGGCLE YRRSVTGYTV KFSDALISWK 720 SKKQETVARS SAEAEFRAMA SPVAEITWLE GNINREEEMS VMVSALTHVV VGNHHSENIE 780 NHHQNNTLIS RGVGEKRGRD EVLLHETNSS HMILSSGGEG SSIRTTREAT LIYTNSTNNS 840 IIDESGNNQV RGRYRGVRER PWGKWAAEIR DPYKAARVWL GTFDTAEGAA RAYDEAALRF 900 RGSKAKLNFP ENVTLLVPSS IQQTLYSSPD PIVSPYRSNF IIGHTSRELE PILHTNPSNF 960 IEHSSTYQEP IAHTSSLYRS NFIERNHHMV QQEPYFQAGS TSRGSDFHQT TNSSNSSNYD 1020 HPSSSSG

Sequence ? help Back to Top

Protein Sequence Length: 1027 aa Download sequence Send to blast

MAVDVSNEAA VAPSHSIEID HYHPLYLHPS DTSGSFLVSI QLTGPENYAI WSRSMRLALL  60
GKSKVSFVDG KHTREAFLSS LHDLWEKCNA IVLSWIINSI RKELLSSVIY ALNASKVWSN  120
LKERFDKVDG SRIHFLHTEI HSMSQGTSTV SDYFSRLREC WDKFDAIMSC PSCNCPESRK  180
YMQHFDYQRL LQFLTGLNES YAPSRSQILM MTPTPTINQA YFMVISEESQ RSLGKSVQNL  240
NINEGAAFYT SKGNFKPNSG GSGVQFRPST GQGHPEHNRS GFYIGHGNAA NFVNKHENPS  300
DMDGYAVNFS NALGTSSQSS HPSAPYFTPE QYNQILQMIG QNSETSGTAL SAGYVTSLKK  360
SGKFAPRSVP AVFLGYYLTR KGYKMYLLEE KSFTISRDVV FTEDVFFQHL STTFPPIFSP  420
PLCSTQYRPA ESIYVPHDHD SPPHALEVNP SIPPEAALVS VSTSVEPVRK SNRIPKPPIW  480
MKDYIYPTRT NVSCHFPISN YVNYDQISDS YISALAAYSA ILEPTSYSEA SSDPKWIAAM  540
QSQIAALMDN STWSIVDLPS GKSPIGCKWV YKIKHKANGE VERYKTRLVA KGFNQKEGLD  600
YTGTFSPISK TVIVQSVVAL AAAKKWFIYQ MDVHNAFLQG DIFEEVLSQF MHKPNQSHME  660
AALRVVRYVK AEPGFGLLMP SESSGKLVAY CDSYWGGCLE YRRSVTGYTV KFSDALISWK  720
SKKQETVARS SAEAEFRAMA SPVAEITWLE GNINREEEMS VMVSALTHVV VGNHHSENIE  780
NHHQNNTLIS RGVGEKRGRD EVLLHETNSS HMILSSGGEG SSIRTTREAT LIYTNSTNNS  840
IIDESGNNQV RGRYRGVRER PWGKWAAEIR DPYKAARVWL GTFDTAEGAA RAYDEAALRF  900
RGSKAKLNFP ENVTLLVPSS IQQTLYSSPD PIVSPYRSNF IIGHTSRELE PILHTNPSNF  960
IEHSSTYQEP IAHTSSLYRS NFIERNHHMV QQEPYFQAGS TSRGSDFHQT TNSSNSSNYD  1020
HPSSSSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-23	854	913	3	63	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	0.0	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015072692.1	0.0	uncharacterized protein LOC107016883

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50080.1	3e-25	ethylene response factor 110