PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g001650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 275aa MW: 31772.2 Da PI: 8.9127 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.9 | 1.9e-53 | 10 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yL++++++k+++ ++i+evd+yk++Pw+Lp+k++ +ekewyfF++rd+ky++g r+nra+ sgyWkatg+dk ++ Sopen04g001650.1 10 LPPGFRFHPTDEELIMYYLRNQATSKPCPS-SIIPEVDVYKFDPWELPEKTEFGEKEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTDKGIY 101 79**************************99.89***************99999**************************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s +++ vg+kk Lvfykg+ pkg ktdW+mheyrl Sopen04g001650.1 102 S-GTKYVGIKKALVFYKGKPPKGIKTDWIMHEYRL 135 *.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.01E-64 | 7 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.043 | 10 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-26 | 11 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009825 | Biological Process | multidimensional cell growth | ||||
GO:0009835 | Biological Process | fruit ripening | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MVGKNNSNHL PPGFRFHPTD EELIMYYLRN QATSKPCPSS IIPEVDVYKF DPWELPEKTE 60 FGEKEWYFFT PRDRKYPNGV RPNRAAVSGY WKATGTDKGI YSGTKYVGIK KALVFYKGKP 120 PKGIKTDWIM HEYRLSESRT QPTRPNGSMR LDDWVLCRIY KKKNLGRAIE MMKVEEDTQE 180 PQIMSVITPI HEVVASNGQQ TLKLPRTCSL SHLLEMDYFG SISQLFDDNN SYNTISQNNT 240 LMTNVNGYVV PHQAMEKFQL GEVSQISMNP SYQFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-72 | 10 | 164 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-72 | 10 | 164 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-72 | 10 | 164 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-72 | 10 | 164 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-72 | 10 | 164 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 6e-72 | 10 | 164 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 6e-72 | 10 | 164 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 6e-72 | 10 | 164 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 6e-72 | 10 | 164 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 6e-72 | 10 | 164 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 6e-72 | 10 | 164 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 6e-72 | 10 | 164 | 20 | 170 | NAC domain-containing protein 19 |
4dul_A | 5e-72 | 10 | 164 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 5e-72 | 10 | 164 | 17 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00221 | DAP | Transfer from AT1G69490 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015072285.1 | 0.0 | NAC domain-containing protein 2 | ||||
Swissprot | K4BNG7 | 0.0 | NAP2_SOLLC; NAC domain-containing protein 2 | ||||
TrEMBL | M0ZSU1 | 0.0 | M0ZSU1_SOLTU; Uncharacterized protein | ||||
STRING | Solyc04g005610.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA746 | 24 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-113 | NAC-like, activated by AP3/PI |
Publications ? help Back to Top | |||
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