PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g040830.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 362aa    MW: 40189.8 Da    PI: 9.901
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g040830.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix513.7e-1665152186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W+++ + +Liea  e+  +l+rg+lk+++W++v++ + +++ ++++pk   qCk++++ ++k+yk +k     +  +  s++p+fd+l+
  Sopen03g040830.1  65 CWSEEATAVLIEAWGERYMELSRGNLKQKHWKDVADIVsSREDYRKTPKtdiQCKNRIDTVKKKYKLEKSKIAAG--QGPSKWPFFDKLD 152
                       7*************************************856666666644449*****************99997..56668******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.5E-2663153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MENDEETQSG GSGSPESPRS NGRITVTVAS APPQNTLTLA LPIQQSRPAG ASGGGGGSGG  60
GREDCWSEEA TAVLIEAWGE RYMELSRGNL KQKHWKDVAD IVSSREDYRK TPKTDIQCKN  120
RIDTVKKKYK LEKSKIAAGQ GPSKWPFFDK LDMLIGPTAK INPTVAAGPS NLYSGNQHVP  180
MGIPMGVRSL PQLRQHQQLQ KQKQPSRKRP HMDSDTSESE SEPDLSPAST DSFPPGTFQK  240
KRPRFQKEML NSSALRQGGI GEASGNKNWG NSVRELTQAI LKFGEAYEQT ETAKLQQMVE  300
MEKQRMKFAK DMELQRMQFF MNTQLEISQL KHRRSENSNH HSNNHAAATS NHNNNNNSDN  360
SI
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015070333.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG81e-104ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0V0I8Y80.0A0A0V0I8Y8_SOLCH; Putative trihelix transcription factor GTL1-like
STRINGPGSC0003DMT4000884010.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103321823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-66sequence-specific DNA binding transcription factors