PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g039720.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 354aa    MW: 38408.3 Da    PI: 6.6926
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g039720.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.82.6e-17243277135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Sopen03g039720.1 243 CLHCASDKTPQWRTGPLGPKTLCNACGVRYKSGRL 277
                       99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.8E-7912331IPR016679Transcription factor, GATA, plant
SMARTSM004014.8E-15237287IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.374237273IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-14239300No hitNo description
Gene3DG3DSA:3.30.50.102.1E-13239274IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.12E-13242289No hitNo description
PROSITE patternPS003440243268IPR000679Zinc finger, GATA-type
PfamPF003203.1E-15243277IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEASDLFVSG FFSHAGDEQI PNNINNNINN NCNNFSVDDL LVIPKEDDVM ADAFFNSITG  60
NSADSSTVTV VDSCNSSVSG GDGQFNGNLS GRSFTDAPFP NSELCVPFDD LAELEWLSNF  120
VEESFSSDDV QNLQFIPVAN INSSSTITTD SSSSATTFST GPNSPPAFPA DTSVPGKARS  180
KRSRAAPCDW SSRLQLLLSP ATSSSESNNI SPPSVNNTTF ATAKATKAPS KKRESVETPG  240
RKCLHCASDK TPQWRTGPLG PKTLCNACGV RYKSGRLVPE YRPASSPTFI SARHSNSHRK  300
VLELRRQKDL QRHQAHHHQH QLLSQPTIFG VSNGGDEFLL HHHQNCGPNF RHLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067847.10.0GATA transcription factor 12-like
TrEMBLA0A3Q7GKQ80.0A0A3Q7GKQ8_SOLLC; GATA transcription factor
STRINGSolyc03g120890.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-67GATA transcription factor 12