PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g039660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 253aa MW: 27567.6 Da PI: 6.3639 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.3 | 8.1e-18 | 72 | 120 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+ +++g Sopen03g039660.1 72 YRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAAVSIKG 120 9****998.**********843...6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.02E-31 | 70 | 130 | No hit | No description |
PROSITE profile | PS51032 | 23.235 | 71 | 128 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-21 | 71 | 129 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-36 | 71 | 134 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-31 | 71 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 72 | 83 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.5E-12 | 72 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 94 | 110 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MAEVEVQSSE ADSSNTTSSV SSSSSSSLSF NSMHKSVFDS SNKLPEEKKR RTKGTKKQKS 60 INNNSESRHQ IYRGVRMRSW GKWVSEIREP RKKSRIWLGT YPTAEMAARA HDVAAVSIKG 120 NSAILNFPHL IDSLPRPLSK SPRDIQAAAA LAASMRDPPS SSSSASSSIT TTISTTISAG 180 SEELCEIIEL PNLEESDDSK TDLTLSESVE GLLYSPWWAD HSTDFCGYFL EQSAAGAGES 240 LISCSFETLK WAC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-20 | 69 | 129 | 12 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 47 | 52 | KKRRTK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015068382.1 | 0.0 | ethylene-responsive transcription factor TINY | ||||
Swissprot | Q9LYD3 | 6e-52 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A3Q7GKP5 | 1e-132 | A0A3Q7GKP5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g120840.1.1 | 1e-139 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 1e-50 | ERF family protein |
Publications ? help Back to Top | |||
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