PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g038620.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 349aa    MW: 39598.6 Da    PI: 9.2455
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g038620.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1272e-391102613137
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssaseceaesss 79 
                        kkdrhski T+ g+RdRR+Rls+e+a++fF Lqd LGfdk+skt+eWLl+++k a+ +l++                  ss++++ce  s +
  Sopen03g038620.1 110 SKKDRHSKINTAHGPRDRRMRLSLEIARKFFNLQDLLGFDKASKTVEWLLTKSKSAVNDLVQKinkdkcsgstnpniatVSSPSESCEVISGV 202
                       79*************************************************************888888876666666533444455444444 PP

               TCP  80 ssasnsssg.kaaksaakskksqksaasalnlakesrakarararertrekmriknkln 137
                         +s+ +++ +  k+++k+ ks ++a  +  +akesr++arararert  k+++++++n
  Sopen03g038620.1 203 IDESAATNTaETHKQQKKKVKSIRRAIFHPVVAKESRKEARARARERTIIKKSLNDNTN 261
                       4333322222333333344444455555788899*************988887776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-43110254IPR005333Transcription factor, TCP
PROSITE profilePS5136934.256111169IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.321236253IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MYPSSNNSPN ISSSSSFFHI NIPSPSMQYE PEFIQYFQDF QFIQPSYDQN NLDTNITRED  60
SDKLDKIEED QSIIKSCNNK KDEKSSSSTS TIRRKNNKRT TSGSAGVGPS KKDRHSKINT  120
AHGPRDRRMR LSLEIARKFF NLQDLLGFDK ASKTVEWLLT KSKSAVNDLV QKINKDKCSG  180
STNPNIATVS SPSESCEVIS GVIDESAATN TAETHKQQKK KVKSIRRAIF HPVVAKESRK  240
EARARARERT IIKKSLNDNT NNNNNGDQSM ADEDLTRSLG SWNTTFEDHQ SGSQGYNNNN  300
NNMNVVDNFN LVDTSNWSPF MFNYHQINTE ISQEHQLTNF QYSGKLWEA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHM5972150.0HM597215.1 Solanum pennellii BRANCHED1A (BRC1A) gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069276.10.0transcription factor TCP12-like isoform X1
RefseqXP_027771218.10.0transcription factor TCP12-like isoform X1
TrEMBLF6KB940.0F6KB94_SOLTU; BRANCHED1A isoform 1
STRINGSolyc03g119770.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.16e-27TCP domain protein 12