PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g038500.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 164aa    MW: 18764.4 Da    PI: 6.6409
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g038500.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.48.8e-09248147
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                      k ie++  r+v+fskR+ +++         ++a+v v++fs++gk y
  Sopen03g038500.1  2 KLIESEKARTVSFSKRKRTLFQDVDKFAAQTGADVGVMLFSPSGKPY 48
                      569*****************************************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-4153IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-15174IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.512154IPR002100Transcription factor, MADS-box
PfamPF003191.1E-14449IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MKLIESEKAR TVSFSKRKRT LFQDVDKFAA QTGADVGVML FSPSGKPYSH GSTSIEEIID  60
QYLKVKLEDH QRDHAEGKMN GFEVLGALHK ELQAWNEKEK NRKLMYKIMH SGSEAPPDKH  120
MEEQKLALKL RVEKIKKETQ DAILAEHLKF DLNVAPEPEE DESS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027771453.11e-117MADS-box transcription factor 23-like
TrEMBLM1DHK15e-86M1DHK1_SOLTU; Uncharacterized protein
STRINGSolyc03g119680.1.11e-115(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-13AGAMOUS-like 61