PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g032410.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 299aa    MW: 33398.1 Da    PI: 5.6314
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g032410.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.32e-36101081100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCaaCk++rr+C  dC+lapyfpa+qpk f+n+h+lFG+sn+lk+l++l++++++ am+s++y+A+ar + PvyG+v+ i++l  +++  ++e
  Sopen03g032410.1  10 ACAACKYQRRRCH-DCPLAPYFPADQPKMFQNAHRLFGVSNILKILRQLDPSQKKVAMRSIIYQANARDKYPVYGCVAEIQNLLYNIQVYEEE 101
                       7***********6.8****************************************************************************** PP

            DUF260  94 lallkee 100
                       l++++++
  Sopen03g032410.1 102 LQAVNAQ 108
                       **99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.0849109IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-3510106IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MTLKGGTSQA CAACKYQRRR CHDCPLAPYF PADQPKMFQN AHRLFGVSNI LKILRQLDPS  60
QKKVAMRSII YQANARDKYP VYGCVAEIQN LLYNIQVYEE ELQAVNAQLT FYRQQQQQQE  120
ISTNLSDSVS QIQLGMPPPV SASTPANGNG LTLFHQDMTS PYNVAANAVL PVQSYPSYSN  180
NNYAAYNNTT FVDPKENNAV NSLWIQQSYG NNVCNNNIMQ SQLPASQTLV VPQEVTQDYD  240
GIHPYFDGID DRQSYNGSKD AYESSSESSL KDTRQSMEHV AENELKNAAA CFTLTSING
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-2661127114LOB family transfactor Ramosa2.1
5ly0_B2e-2661127114LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069527.10.0LOB domain-containing protein 27
TrEMBLM1B0F50.0M1B0F5_SOLTU; Uncharacterized protein
STRINGSolyc03g113360.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-50LOB domain-containing protein 27