PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen03g030640.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Protein Properties

Length: 1000aa MW: 112691 Da PI: 7.8175

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen03g030640.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.9	9e-19	26	116	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffkv+ d + ++ l +p kfa++ + ++++ led+sg +W+v++ ++++g+ +++GW +F +++gL++gDf+vF+++ + f Sopen03g030640.1 26 FFKVM--IDKSFLQVLFFPPKFARSVTHL--TDQETYLEDSSGHRWRVTV--CNHKGSLSIRQGWPKFSSDHGLDVGDFLVFHYVPGQHF--I 110 89999..78888888********9655..4568***********..*****************************9855666..9 PP EEEE-S CS B3 94 vkvfrk 99 vk+f + Sopen03g030640.1 111 VKIFGT 116 999976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.71E-21	23	119	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	13.098	24	117	IPR003340	B3 DNA binding domain
CDD	cd10017	3.98E-18	25	114	No hit	No description
Gene3D	G3DSA:2.40.330.10	6.6E-20	25	119	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.3E-16	26	115	IPR003340	B3 DNA binding domain
SMART	SM01019	1.6E-12	26	117	IPR003340	B3 DNA binding domain
SMART	SM01019	0.68	411	495	IPR003340	B3 DNA binding domain
CDD	cd10017	3.16E-6	415	491	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.0E-7	419	489	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-8	420	491	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	8.036	442	506	IPR003340	B3 DNA binding domain
Pfam	PF09331	7.3E-30	584	716	IPR015410	Domain of unknown function DUF1985

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1000 aa Download sequence Send to blast
MECENEACGG CKKDCMLIHG KGVLSFFKVM IDKSFLQVLF FPPKFARSVT HLTDQETYLE 60 DSSGHRWRVT VCNHKGSLSI RQGWPKFSSD HGLDVGDFLV FHYVPGQHFI VKIFGTSGCE 120 KKSCSDIGNG RKRARTYLEA TAPAELFQTT DVTSVKKKSK TSAESESETV TYKTNAANFK 180 TSAESESEKV RYKANAANFK TSAESESEKV TYKTNTANFT TNINADIGKG QSVHSAIDVD 240 ESCCVIDRNA QYDQEDDRLC LHLSSFEMPA SKPLTVGTSS PFKGDIGKDN QVEANFRSQT 300 ESNLNVEIDN LNSKAPWSKL EAGIRATNMV SSPAKDIPLR YPKYKKSNEA SQFAREAMLV 360 KKEFEEITTV AFSPARAIHG GEYANGNEKV IKSEPADSGD ARSLNAGSYS CLVEIDGRDF 420 LELPESWRKY LPQKAKLGRM IIYLRGQDKR IWPTLYNSRS GFNVLTCGWK QVTATYGLNP 480 GDECLFQLSP SFSSSCEFTN IMEECKSRDG DSRRVYDSDD EMWAENRSKR LHDPLLMKNK 540 NVLEPKKKTE KIQKKKPRKV TSTVSRPTLP KGQITKCLLL LAVGHENRDV LHVRHTNGNV 600 LVFGMKEFAI VTGLKCKGNV KEFSYPNSTQ SRLLQKYFPD CPTGITKSRL IQRFAMGNWE 660 TTQEYVEMAI LYFINTFLLC HFGETFIRIE EFLMVEDGRY EMYPWGQIAF NKLITSLRQD 720 FNQSKQMYHL FGMPYALNVW IYECPSTLSP DLAVEVANGI PRICNWKVVA EKPKYEKLMT 780 SIFSENTCSN IALTQDEVES LDLPDSQEVN RNEVSTPPVG AKKVHTKDKS GFEDFSTSPP 840 DHLLRRSSRV SDTSSPPPSK RRKNTDTHKT KGSKTLSKQS KPQLNQSFSM PAEEHTPPAN 900 VSSAHVSSQV SKDKSVYPDI EELKQHMKEY VDSKFEYLVN LIKANHIEVM NSKNREDGQQ 960 SKDMGGKSTP HMIEVSDEEG NDGHQATSPI QMELDVDNQV

Sequence ? help Back to Top

Protein Sequence Length: 1000 aa Download sequence Send to blast

MECENEACGG CKKDCMLIHG KGVLSFFKVM IDKSFLQVLF FPPKFARSVT HLTDQETYLE  60
DSSGHRWRVT VCNHKGSLSI RQGWPKFSSD HGLDVGDFLV FHYVPGQHFI VKIFGTSGCE  120
KKSCSDIGNG RKRARTYLEA TAPAELFQTT DVTSVKKKSK TSAESESETV TYKTNAANFK  180
TSAESESEKV RYKANAANFK TSAESESEKV TYKTNTANFT TNINADIGKG QSVHSAIDVD  240
ESCCVIDRNA QYDQEDDRLC LHLSSFEMPA SKPLTVGTSS PFKGDIGKDN QVEANFRSQT  300
ESNLNVEIDN LNSKAPWSKL EAGIRATNMV SSPAKDIPLR YPKYKKSNEA SQFAREAMLV  360
KKEFEEITTV AFSPARAIHG GEYANGNEKV IKSEPADSGD ARSLNAGSYS CLVEIDGRDF  420
LELPESWRKY LPQKAKLGRM IIYLRGQDKR IWPTLYNSRS GFNVLTCGWK QVTATYGLNP  480
GDECLFQLSP SFSSSCEFTN IMEECKSRDG DSRRVYDSDD EMWAENRSKR LHDPLLMKNK  540
NVLEPKKKTE KIQKKKPRKV TSTVSRPTLP KGQITKCLLL LAVGHENRDV LHVRHTNGNV  600
LVFGMKEFAI VTGLKCKGNV KEFSYPNSTQ SRLLQKYFPD CPTGITKSRL IQRFAMGNWE  660
TTQEYVEMAI LYFINTFLLC HFGETFIRIE EFLMVEDGRY EMYPWGQIAF NKLITSLRQD  720
FNQSKQMYHL FGMPYALNVW IYECPSTLSP DLAVEVANGI PRICNWKVVA EKPKYEKLMT  780
SIFSENTCSN IALTQDEVES LDLPDSQEVN RNEVSTPPVG AKKVHTKDKS GFEDFSTSPP  840
DHLLRRSSRV SDTSSPPPSK RRKNTDTHKT KGSKTLSKQS KPQLNQSFSM PAEEHTPPAN  900
VSSAHVSSQV SKDKSVYPDI EELKQHMKEY VDSKFEYLVN LIKANHIEVM NSKNREDGQQ  960
SKDMGGKSTP HMIEVSDEEG NDGHQATSPI QMELDVDNQV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2210	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	2e-12	B3 family protein