PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g026460.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 282aa    MW: 32275 Da    PI: 7.2994
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g026460.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12.1e-081864246
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                        WT+eE +++  a++ +  +   +W ++a+ ++ g++  ++++ +  
  Sopen03g026460.1 18 REWTKEENKQFESAIAIYDEKtpdRWFKVAALIP-GKSVIDVINQYKE 64
                      68********************************.********99975 PP
2Myb_DNA-binding461.3e-14114158347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+ +++ + +++G+g+W+ I+++m   Rt+ q+ s+ qky
  Sopen03g026460.1 114 PWTEEEHRRFLMGLEKYGKGDWRNISKKMVISRTPTQVASHAQKY 158
                       8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-51466IPR009057Homeodomain-like
PROSITE profilePS512938.0121569IPR017884SANT domain
SMARTSM007173.1E-111668IPR001005SANT/Myb domain
SuperFamilySSF466893.01E-121773IPR009057Homeodomain-like
PfamPF002497.8E-71864IPR001005SANT/Myb domain
CDDcd001676.54E-81966No hitNo description
Gene3DG3DSA:1.10.10.606.4E-14104165IPR009057Homeodomain-like
PROSITE profilePS5129421.35107163IPR017930Myb domain
SuperFamilySSF466891.79E-16108162IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-18110162IPR006447Myb domain, plants
SMARTSM007176.8E-13111161IPR001005SANT/Myb domain
CDDcd001672.74E-10114158No hitNo description
PfamPF002495.7E-13114158IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
METLFSTTSS SWMNKNKREW TKEENKQFES AIAIYDEKTP DRWFKVAALI PGKSVIDVIN  60
QYKELVSDVY DIEAGLVPNP GYFASSITLE LVDHCGFRKR GSKSCDQERK KGVPWTEEEH  120
RRFLMGLEKY GKGDWRNISK KMVISRTPTQ VASHAQKYYQ RQISGGKDKR RPSIHDITTV  180
HITADSASPN NLVYNINSFS KEKLYATDNS SFQKTTTADI VNCWNANLSN DHEDVMDFGS  240
SFVAYPYEIA SQSWGGEHGI HDITMNGDSQ LHFQSTRYQI WG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-131898988RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00347DAPTransfer from AT3G11280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068273.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H71e-71DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A3Q7FM990.0A0A3Q7FM99_SOLLC; Uncharacterized protein
STRINGSolyc03g096350.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.23e-84MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]