PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g026050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 286aa MW: 31959.7 Da PI: 7.0305 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 9.8e-18 | 45 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+WvAeIr+p++ r+r +lg+f tae+Aa+a+++a+ l+g Sopen03g026050.1 45 RYRGVRQRS-WGKWVAEIREPRK---RTRRWLGTFATAEDAARAYDRAAIILYG 94 59****999.**********954...5999*******************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-21 | 45 | 102 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.9E-11 | 45 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-36 | 45 | 108 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.326 | 45 | 102 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-29 | 45 | 102 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.16E-21 | 45 | 104 | No hit | No description |
PRINTS | PR00367 | 2.5E-10 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MNSTSADSNY HQYPHPTNQQ GKNTSEENSN KRGKGKGGPD NNKFRYRGVR QRSWGKWVAE 60 IREPRKRTRR WLGTFATAED AARAYDRAAI ILYGSKAQLN LQPSGANATS SSSNSSKRGS 120 TSSSSTTQTL RPLLPRPPSA SFDFSFSSSS TLLPPNVLAP SNNYGFYPAV QYADDMSQNP 180 HQKQTFDDNG YHLDTGMMLW SDSNPNPNPN LTKEDQNQQY QHQHQQHNCL YESNVYTSVD 240 ATAPVVSDPV AAVASPDLWP SIVDDSDNYH PAHIWDYGND PFLFDF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-17 | 46 | 101 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00674 | SELEX | Transfer from GRMZM2G093595 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015068902.1 | 0.0 | ethylene-responsive transcription factor ABI4-like | ||||
TrEMBL | M1DPJ6 | 1e-110 | M1DPJ6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400092312 | 1e-111 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40220.1 | 3e-28 | ERF family protein |