PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g022900.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family RAV
Protein Properties Length: 1834aa    MW: 207845 Da    PI: 6.9745
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g022900.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.83.1e-094694155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      s++kGV    ++g W A+I+       + +r++lg+f t+ +Aa a++ a+ +l g
  Sopen03g022900.2 46 SKFKGVV-GQNNGHWGAQIYA------NhQRIWLGTFKTETDAAMAYDSAAIRLLG 94
                      799***6.6679******999......44**********99************987 PP
2B389.72.2e-28170253185
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                       f+k+ltpsdv+k++rlv+pkk+a+++  +    ++ +++++d+s r W+++++y+k+s+++v+tkGW++Fvk++gL+++D++vF l 
  Sopen03g022900.2 170 FQKELTPSDVGKLNRLVIPKKYATKYfpQ---IQDEEMIFYDTSRRLWKFRYCYWKSSQSFVFTKGWNKFVKDKGLRAKDTIVFNLC 253
                       99************************633...35668***********************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.27E-1746105No hitNo description
SuperFamilySSF541714.18E-124697IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-144796IPR001471AP2/ERF domain
SMARTSM003809.2E-1547109IPR001471AP2/ERF domain
PROSITE profilePS5103215.63347103IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.2E-31167252IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.89E-27168255IPR015300DNA-binding pseudobarrel domain
CDDcd100171.19E-27169252No hitNo description
PROSITE profilePS5086314.395170274IPR003340B3 DNA binding domain
SMARTSM010195.4E-22170274IPR003340B3 DNA binding domain
PfamPF023621.5E-25170253IPR003340B3 DNA binding domain
PfamPF135898.8E-9523644No hitNo description
Gene3DG3DSA:3.30.565.105.6E-6525647IPR003594Histidine kinase-like ATPase, C-terminal domain
SuperFamilySSF558742.26E-7525646IPR003594Histidine kinase-like ATPase, C-terminal domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000724Biological Processdouble-strand break repair via homologous recombination
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1834 aa     Download sequence    Send to blast
MEDETNLISS TTNVTVGDCD SSGSNHLLPK KRNINAREGK GCISGSKFKG VVGQNNGHWG  60
AQIYANHQRI WLGTFKTETD AAMAYDSAAI RLLGPDHSHR NLSWTNSTIQ EPNFQTQFST  120
EDILRMIKEG SYTSRFDEYL KDKFEDHFQS LKNLQKVNEG NAEFSYKQLF QKELTPSDVG  180
KLNRLVIPKK YATKYFPQIQ DEEMIFYDTS RRLWKFRYCY WKSSQSFVFT KGWNKFVKDK  240
GLRAKDTIVF NLCEFKNGTK ENCNAFVIDV VKSIDGNLAL NHHEQEETID DHEVGTQEFT  300
KAQPFDDDLV PVWLFGKQIV LCSSFSILPK TQPLSLFSLL LLCEFSGIYF LQIAICRKLQ  360
RKIKMSSKRH CEDFSTETPR KKPSRVLRIQ VDSDEEVGNN EGKVFYFRVL LPNGITLELQ  420
VPGPPSEMPV EDFVILVRRE YQNIGRRTDS PKPRRQINWT SKDLHFVDAF DNRITKTMDF  480
RKFKSNKSHM LRLCDGSVEA DKYENMWDLT PDTDLLKELP EEYTFETALA DLIDNSLQAV  540
WSKSTDQRRL ISLELTKSRI TIFDTGLGMD GSAENSIVKW GKMGASIHRS ARDRGIGGKP  600
PYLTPYFGMF GYGGPIASMH LGRASVSSKT KECKKVYVLH LERDSLLRCS SSQQTWRTDG  660
NVRDPLEDEL RHSVDGSFTK VEIFYPKMRS ESVQELQYKL KDIYFPYIQC DEVSKTGKTV  720
MPIEFQVNGT NLAEIEGGEV ATTNLLSCNG PEFVMQLSFQ VKDSSGLKVG SGTKSSFEAH  780
ARLRCVYFPV AQGKESIEVI LEKLEADGYG ITENFETFSH VSVRRLGRLL PDARWSWLPF  840
MEPKLRKSDR AEVLKRCCFR VKCFIETDAG FNPTPSKTDL AHHHPFTIAL RNFGNKPSKK  900
ENDVLIEIAK DGKKLSLLQL EKLYQEWLFQ MHDRYDEEID CGEDQPTFVV VGPLHKKELG  960
VSADVMRIHK AFQRKGITWK AGQKVKILKG AYRGFHKNNI FATLEFIILE GWQGDSGGEA  1020
RIICRPLNVP AESGCRLTFD KGCACFEIRD SKSLPISVID TGKCLSVDKT EWENQILKHQ  1080
EKTTPSSIDI LDAEQCLELE IEGALPQDVD AGHEPPEEIT AVVRPVSFTS ATASKNLDQK  1140
YIMKENFVMT LEIKFKADEN EKEQHIYSGQ LNPSSLKGFH GLYMFPLKKK LPNLFQTAGI  1200
YLFRFSLIES CTISVKEVRV KALSEPASWE LVSDGKSTHS VRVGSCFPEV FSVACRDRFC  1260
NRIPFKSQTE IEMKLSSGGR AISSECSYDQ YITHDSYTMK FKNVTIESSE LDMIRPSYNA  1320
TLHINSRENP FVVAIPCAVI PGPLQRILLR PVDFGKKLVP GMVLKELALE TFDKYGNHMR  1380
KDEHIKLTLE GLHLLDKGNS FYKVDDHGCV NLSGTLKVTA GYGKLVSLSV LSGDEVVFKK  1440
EFQTDRRSLR VASKVPKVCA AGSHLEDVVF EVVNSAGEVD EDIDSEIEDG HSHTLQIRQD  1500
SLREEDNVRY SFHRGRCIVR SIPLPNNEGL FFFVASHSRF HELQTSIEVH VEKAVIQPRS  1560
PKKEILLLEE SNGKGPETVC HDSYDGRIMI FNDSCASMVL EDRQQKLGDD ICRYGLCIRQ  1620
CDANVESLSI KQSNIELEMS NLGAYIGLDS FHDLYYDKDV IMEKIEGKAD SAAAVIHKLL  1680
RSPKPEQLYL KYAHDILGVV ALLGEVRTHK LSSMLSTYLG EDQMLAIVCK SRAAARALEN  1740
YQMDGNVNCA SALDILAAKL GISIKGRYLV ICLEDIRPYK QGVSSDPQRE LAIPQPTLSN  1800
RETXXXXXXX XXXCEETQGS ILYKSTPVAI YPSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-2516925113101DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025885707.10.0structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 isoform X3
TrEMBLA0A3Q7FMZ20.0A0A3Q7FMZ2_SOLLC; Uncharacterized protein
STRINGXP_009607726.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.13e-80RAV family protein