PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g022900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | RAV | ||||||||
Protein Properties | Length: 1835aa MW: 208001 Da PI: 7.0162 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28.8 | 3.1e-09 | 46 | 94 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s++kGV ++g W A+I+ + +r++lg+f t+ +Aa a++ a+ +l g Sopen03g022900.1 46 SKFKGVV-GQNNGHWGAQIYA------NhQRIWLGTFKTETDAAMAYDSAAIRLLG 94 799***6.6679******999......44**********99************987 PP | |||||||
2 | B3 | 89.7 | 2.2e-28 | 170 | 253 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ltpsdv+k++rlv+pkk+a+++ + ++ +++++d+s r W+++++y+k+s+++v+tkGW++Fvk++gL+++D++vF l Sopen03g022900.1 170 FQKELTPSDVGKLNRLVIPKKYATKYfpQ---IQDEEMIFYDTSRRLWKFRYCYWKSSQSFVFTKGWNKFVKDKGLRAKDTIVFNLC 253 99************************633...35668***********************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.27E-17 | 46 | 105 | No hit | No description |
SuperFamily | SSF54171 | 4.18E-12 | 46 | 97 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-14 | 47 | 96 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.2E-15 | 47 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.633 | 47 | 103 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-31 | 167 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.89E-27 | 168 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.21E-27 | 169 | 252 | No hit | No description |
PROSITE profile | PS50863 | 14.395 | 170 | 274 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.4E-22 | 170 | 274 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-25 | 170 | 253 | IPR003340 | B3 DNA binding domain |
Pfam | PF13589 | 3.3E-11 | 523 | 645 | No hit | No description |
SuperFamily | SSF55874 | 7.15E-6 | 525 | 645 | IPR003594 | Histidine kinase-like ATPase, C-terminal domain |
Gene3D | G3DSA:3.30.565.10 | 3.3E-6 | 526 | 704 | IPR003594 | Histidine kinase-like ATPase, C-terminal domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000724 | Biological Process | double-strand break repair via homologous recombination | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1835 aa Download sequence Send to blast |
MEDETNLISS TTNVTVGDCD SSGSNHLLPK KRNINAREGK GCISGSKFKG VVGQNNGHWG 60 AQIYANHQRI WLGTFKTETD AAMAYDSAAI RLLGPDHSHR NLSWTNSTIQ EPNFQTQFST 120 EDILRMIKEG SYTSRFDEYL KDKFEDHFQS LKNLQKVNEG NAEFSYKQLF QKELTPSDVG 180 KLNRLVIPKK YATKYFPQIQ DEEMIFYDTS RRLWKFRYCY WKSSQSFVFT KGWNKFVKDK 240 GLRAKDTIVF NLCEFKNGTK ENCNAFVIDV VKSIDGNLAL NHHEQEETID DHEVGTQEFT 300 KAQPFDDDLV PVWLFGKQIV LCSSFSILPK TQPLSLFSLL LLCEFSGIYF LQIAICRKLQ 360 RKIKMSSKRH CEDFSTETPR KKPSRVLRIQ VDSDEEVGNN EGKVFYFRVL LPNGITLELQ 420 VPGPPSEMPV EDFVILVRRE YQNIGRRTDS PKPRRQINWT SKDLHFVDAF DNRITKTMDF 480 RKFKSNKSHM LRLCDGSVEA DKYENMWDLT PDTDLLKELP EEYTFETALA DLIDNSLQAV 540 WSKSTDQRRL ISLELTKSRI TIFDTGLGMD GSAENSIVKW GKMGASIHRS ARDRGIGGKP 600 PYLTPYFGMF GYGGPIASMH LGRRASVSSK TKECKKVYVL HLERDSLLRC SSSQQTWRTD 660 GNVRDPLEDE LRHSVDGSFT KVEIFYPKMR SESVQELQYK LKDIYFPYIQ CDEVSKTGKT 720 VMPIEFQVNG TNLAEIEGGE VATTNLLSCN GPEFVMQLSF QVKDSSGLKV GSGTKSSFEA 780 HARLRCVYFP VAQGKESIEV ILEKLEADGY GITENFETFS HVSVRRLGRL LPDARWSWLP 840 FMEPKLRKSD RAEVLKRCCF RVKCFIETDA GFNPTPSKTD LAHHHPFTIA LRNFGNKPSK 900 KENDVLIEIA KDGKKLSLLQ LEKLYQEWLF QMHDRYDEEI DCGEDQPTFV VVGPLHKKEL 960 GVSADVMRIH KAFQRKGITW KAGQKVKILK GAYRGFHKNN IFATLEFIIL EGWQGDSGGE 1020 ARIICRPLNV PAESGCRLTF DKGCACFEIR DSKSLPISVI DTGKCLSVDK TEWENQILKH 1080 QEKTTPSSID ILDAEQCLEL EIEGALPQDV DAGHEPPEEI TAVVRPVSFT SATASKNLDQ 1140 KYIMKENFVM TLEIKFKADE NEKEQHIYSG QLNPSSLKGF HGLYMFPLKK KLPNLFQTAG 1200 IYLFRFSLIE SCTISVKEVR VKALSEPASW ELVSDGKSTH SVRVGSCFPE VFSVACRDRF 1260 CNRIPFKSQT EIEMKLSSGG RAISSECSYD QYITHDSYTM KFKNVTIESS ELDMIRPSYN 1320 ATLHINSREN PFVVAIPCAV IPGPLQRILL RPVDFGKKLV PGMVLKELAL ETFDKYGNHM 1380 RKDEHIKLTL EGLHLLDKGN SFYKVDDHGC VNLSGTLKVT AGYGKLVSLS VLSGDEVVFK 1440 KEFQTDRRSL RVASKVPKVC AAGSHLEDVV FEVVNSAGEV DEDIDSEIED GHSHTLQIRQ 1500 DSLREEDNVR YSFHRGRCIV RSIPLPNNEG LFFFVASHSR FHELQTSIEV HVEKAVIQPR 1560 SPKKEILLLE ESNGKGPETV CHDSYDGRIM IFNDSCASMV LEDRQQKLGD DICRYGLCIR 1620 QCDANVESLS IKQSNIELEM SNLGAYIGLD SFHDLYYDKD VIMEKIEGKA DSAAAVIHKL 1680 LRSPKPEQLY LKYAHDILGV VALLGEVRTH KLSSMLSTYL GEDQMLAIVC KSRAAARALE 1740 NYQMDGNVNC ASALDILAAK LGISIKGRYL VICLEDIRPY KQGVSSDPQR ELAIPQPTLS 1800 NRETXXXXXX XXXXCEETQG SILYKSTPVA IYPSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-25 | 169 | 251 | 13 | 101 | DNA-binding protein RAV1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025885705.1 | 0.0 | structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 isoform X1 | ||||
Refseq | XP_025885713.1 | 0.0 | structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 isoform X9 | ||||
TrEMBL | A0A3Q7FMZ2 | 0.0 | A0A3Q7FMZ2_SOLLC; Uncharacterized protein | ||||
STRING | XP_009607726.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 4e-80 | RAV family protein |