PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g021820.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 644aa    MW: 71407.5 Da    PI: 4.642
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g021820.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.26.4e-53281561128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lp+G+rF+Ptdeelv++yL+ k++g + ++ +vi+evdi+k+ePwdLp  + v+++++ew+fF+++d+ky++g+r nrat++gyWkatgkd++
  Sopen03g021820.1  28 LPVGYRFRPTDEELVNHYLRLKINGADSQV-SVIREVDICKLEPWDLPdlSVVESHDNEWFFFCPKDRKYQNGQRLNRATERGYWKATGKDRN 119
                       799************************999.99**************96448888999*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++kkg+++g+kktLv+y grap+g++t+Wv+heyr+
  Sopen03g021820.1 120 IVTKKGSKIGMKKTLVYYIGRAPEGKRTHWVIHEYRA 156
                       ***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-5823179IPR003441NAC domain
PROSITE profilePS5100555.49828179IPR003441NAC domain
PfamPF023651.5E-2629155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002230Biological Processpositive regulation of defense response to virus by host
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MMAVLPGENP IAVLPVDKQM GIPPLNTLPV GYRFRPTDEE LVNHYLRLKI NGADSQVSVI  60
REVDICKLEP WDLPDLSVVE SHDNEWFFFC PKDRKYQNGQ RLNRATERGY WKATGKDRNI  120
VTKKGSKIGM KKTLVYYIGR APEGKRTHWV IHEYRATEKS LDGSHPGQGA FVLCRLFRKN  180
DLKQDEHVDN SNLDAEQNAS VDKSPAEDEL SEAATPLTVI PPLNDCDKSY AAKFSKGEMY  240
GKQIPIESHS NSCIADDTED QMLDITSIPP VQDLEKELGN FYDPSSQPDW KIFSPLHSQM  300
QAELGSSYLQ APLNNDMFGY QKDVPFPYGT NALDINDFLN SVLVNSDEFS CEDSGQELAS  360
HHIDTKTCSI TGPMIKDSGS CSESEAEVTQ GLVEPDFFDP EVLWDNFDRE AAVKREVNSL  420
EATALKARSP LGASYVGNDY AVGNLGFFQN TYPGHYGYPA SIGGSQVPNF LKVEQSGVHN  480
NVVSTESGSG TGIKLRTRQM HNQPDDTQFN QPDNTESRPQ GTAHRRIRLQ VKMQVGPVEC  540
RMRSDSSEGA EIHEAVAEGE KASDEHSSTI SDTTTIKDLV GETDELSTQV KDADDSPVEE  600
SLDVSLNTAT KLSSSSHVYM SKVLVVASLL VVFIGVWSCF RLCV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-442718416170NO APICAL MERISTEM PROTEIN
1ut4_B3e-442718416170NO APICAL MERISTEM PROTEIN
1ut7_A3e-442718416170NO APICAL MERISTEM PROTEIN
1ut7_B3e-442718416170NO APICAL MERISTEM PROTEIN
3swm_A4e-442718419173NAC domain-containing protein 19
3swm_B4e-442718419173NAC domain-containing protein 19
3swm_C4e-442718419173NAC domain-containing protein 19
3swm_D4e-442718419173NAC domain-containing protein 19
3swp_A4e-442718419173NAC domain-containing protein 19
3swp_B4e-442718419173NAC domain-containing protein 19
3swp_C4e-442718419173NAC domain-containing protein 19
3swp_D4e-442718419173NAC domain-containing protein 19
4dul_A3e-442718416170NAC domain-containing protein 19
4dul_B3e-442718416170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0130040.0BT013004.1 Lycopersicon esculentum clone 114229R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015070326.10.0protein NTM1-like 9 isoform X1
TrEMBLA0A1L6K6100.0A0A1L6K610_SOLLC; NACMTF2
STRINGSolyc03g080090.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33632448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.21e-85TCV-interacting protein