PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g010660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bZIP | ||||||||
Protein Properties | Length: 97aa MW: 11319.8 Da PI: 8.2639 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 37.6 | 4.7e-12 | 1 | 48 | 10 | 57 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +++NRe+ArrsR RK++ + eL v L +eN+ L ++l++ +k + Sopen03g010660.1 1 MISNRESARRSRMRKQKHLNELWAQVNCLRNENHLLLNKLNHVSKIHD 48 689*************************************99988655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd14702 | 9.74E-15 | 1 | 48 | No hit | No description |
Pfam | PF00170 | 1.1E-9 | 1 | 49 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 6.4E-6 | 1 | 56 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.1E-9 | 1 | 68 | No hit | No description |
SuperFamily | SSF57959 | 5.25E-11 | 1 | 45 | No hit | No description |
PROSITE profile | PS50217 | 8.588 | 1 | 45 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MISNRESARR SRMRKQKHLN ELWAQVNCLR NENHLLLNKL NHVSKIHDQA LEENAQLKEE 60 TAGLRQIVTK MHLMNGPNYP LKEFQLDDDE PCSGSSQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 15 | RRSRMRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 1e-121 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015069239.1 | 2e-66 | basic leucine zipper 43-like | ||||
Swissprot | Q9FMC2 | 4e-24 | BZP43_ARATH; Basic leucine zipper 43 | ||||
TrEMBL | A0A3Q7G6R2 | 8e-62 | A0A3Q7G6R2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g046440.1.1 | 1e-62 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA947 | 24 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30530.1 | 2e-21 | basic leucine-zipper 42 |
Publications ? help Back to Top | |||
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