PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen03g006640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 183aa MW: 20665.3 Da PI: 5.4321 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 25.2 | 2e-08 | 16 | 58 | 2 | 44 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +i+++++r+vtfskR+ + K A+ + C++++ +i ++g Sopen03g006640.1 16 KIQDETKRKVTFSKRLPSLYKNASKIVRACNVDIGIISSCPSG 58 799*********************************9888877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.208 | 7 | 59 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-4 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-13 | 8 | 78 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.3E-11 | 16 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 183 aa Download sequence Send to blast |
MEDKKTAGRQ KIPIEKIQDE TKRKVTFSKR LPSLYKNASK IVRACNVDIG IISSCPSGRN 60 QYSYVHPTTA VVIDHFVNPT MELDLGTRLV AENARNIAIE NNIRLNELEA REAAEKEKVR 120 SLEQMNNARG KCWWESIDQI DAENLTTFET TLNFAEGILK DQLKKLEIGT SSSSEAPPEN 180 EDN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015068598.1 | 1e-134 | agamous-like MADS-box protein AGL29 | ||||
Refseq | XP_015068599.1 | 1e-134 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A3Q7FFW5 | 1e-127 | A0A3Q7FFW5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g033900.1.1 | 1e-127 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-15 | AGAMOUS-like 61 |