PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g004280.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 685aa    MW: 76038.4 Da    PI: 7.8439
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g004280.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.7e-067697223
                      EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                      kC++C++ F ++ n++rH+r+H
  Sopen03g004280.1 76 KCEKCSREFYSPINYRRHMRLH 97
                      7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.6197597IPR007087Zinc finger, C2H2
SMARTSM003550.00557597IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MPVAKLSIGA TPAAMKADEG NDPLDTLIRQ AMGKEPLFSF SRTGDGPVQW IQLLNGLEQQ  60
DNAGGWPMLT PAKYQKCEKC SREFYSPINY RRHMRLHRRA LNNFDKESRK YRDLLGAFWD  120
KLSLDDIKEV VSLHDVSIKD LSGSSLVQDL ATSMRKPAVW TLPQDYYKAG LALLDLIQGI  180
PSKLTSGELF SVLDDASERT FLCAGTAESL QKYVFDGDAS KKGPELKNLV ACTSFLFEQK  240
LVKAWFADKD AEALRCQKLL FEEEEAAQKK QAELLERKKQ KKLRQKEQRE REQSNWERGD  300
LEVSIAESSI LSAAVSDSNS STPEVSDDTS SCLELVQFSN NEVMDIEAQL NLSNQHLDLV  360
EIQDVEPHPV SAQSRRHFPH TQWQVPKSQR MGRNGSHNNQ NHQVQKLEPV QKHGVFKDRG  420
APVNSSKIWT KKIRVLNGER FRPEPQKEAI NQNQSNCEVM IGSISVPMKN CSIPGLGNCP  480
AVERDNFDSH AEPAMTKKCN LAVKPAKQDA LQGGSNGAAG KLWRPVSRHG SGQHPEEAVM  540
SGKLDSQISS TENCLRSCSM DNPTGKSKNY TCQVSDGNAH QGLGFCSTSA KAFLSQRWKE  600
AISGDHVTLV LSNDTEVSGH PDAQNSSSEA APSSDDQEHG VLVKADNQQT NTGVSNVSSH  660
GNSKLKFRQK PDKSIKTRYI PKQKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275282ERKKQKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067748.10.0uncharacterized protein LOC107012418
TrEMBLA0A3Q7FEM70.0A0A3Q7FEM7_SOLLC; Uncharacterized protein
STRINGSolyc03g025440.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37222128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-102C2H2-like zinc finger protein