PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g003130.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 468aa    MW: 52290.8 Da    PI: 6.8945
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g003130.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.41.5e-1931120198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       ffkv+   d   s++l++p +fa+  ++   ++++  led+sg++W+v +  +++ g+  +++GW+ F +++gLk+gDf+vF++++ + f  v
  Sopen03g003130.1  31 FFKVM--IDKRFSKILYFPPRFARLVSHL--TGQETYLEDSSGQQWRVGI--CNHNGSLAIRQGWRTFSSEHGLKVGDFLVFHYIQGQHF--V 115
                       89999..88888899********888655..5569***************..*********************************97777..9 PP

                       EEEE- CS
                B3  94 vkvfr 98 
                       v+++ 
  Sopen03g003130.1 116 VQIYG 120
                       99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.65E-2228124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.59229122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-2229124IPR015300DNA-binding pseudobarrel domain
CDDcd100174.85E-2130119No hitNo description
SMARTSM010196.4E-1631122IPR003340B3 DNA binding domain
PfamPF023621.9E-1731119IPR003340B3 DNA binding domain
PROSITE profilePS508639.023362460IPR003340B3 DNA binding domain
SMARTSM010191.2365460IPR003340B3 DNA binding domain
CDDcd100171.83E-8371456No hitNo description
SuperFamilySSF1019366.67E-10374460IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-8375457IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MVHHNEACEM CTRTCMLIHG QRDPSPIVSS FFKVMIDKRF SKILYFPPRF ARLVSHLTGQ  60
ETYLEDSSGQ QWRVGICNHN GSLAIRQGWR TFSSEHGLKV GDFLVFHYIQ GQHFVVQIYG  120
TSGCQKINSY NGTHLGKKRP RTNSTETSHD ELSPETDINL RKKWNSTPSV TAIPESERAG  180
HQPVTTTFAS NIDAETGEQQ IVPQEEGTSD VLQGENRPHN HTDIISQRES SSVDVVPLEM  240
ELLTLKAPFL DVKITQTEKI SGPVNDISLL GQTDENDHHV GLISNTSLKS AENGTNVKET  300
RVDKLELKEM EANTRCPSKN FNGKEPKITE KDGQVYPEAV IGNNIAIKSE PADSGDTSFP  360
DAGNFSCSLR VDGRNFLELP QSWPQVIVGR RKMGKIIIYL KGPDNRCWPI IYHENFGSKI  420
LAGNWALFAA VYGLKPGDEC LFQLSNQSKR TFTVHVAHKV DVTQTTLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0138510.0BT013851.1 Lycopersicon esculentum clone 132811R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027770963.10.0uncharacterized protein LOC107012722 isoform X1
TrEMBLA0A3Q7FDL40.0A0A3Q7FDL4_SOLLC; Uncharacterized protein
STRINGSolyc03g007140.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.15e-12B3 family protein