PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g002000.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 401aa    MW: 46042.2 Da    PI: 5.2204
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g002000.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.17.7e-35141052102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       F+ k+ye+++d++++ ++sws+n++sf+v ++ +fa+++Lp+yFkh+nf+SF+RQLn+YgFkk++ e+         weF+++ F +g+ +ll
  Sopen03g002000.1  14 FIAKIYEMVDDPSTDPIVSWSSNNKSFIVRNPPDFARDLLPRYFKHNNFSSFIRQLNTYGFKKIDPEQ---------WEFANEDFLRGQPHLL 97 
                       9***************************************************************9998.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i r+k 
  Sopen03g002000.1  98 KNIYRRKP 105
                       *****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-37998IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.36E-3510103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.7E-6010103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDEAPCSVNA LPPFIAKIYE MVDDPSTDPI VSWSSNNKSF IVRNPPDFAR DLLPRYFKHN  60
NFSSFIRQLN TYGFKKIDPE QWEFANEDFL RGQPHLLKNI YRRKPVHSHS VQNIHSLSSS  120
ALTESERQGY KEDIEKLKHE NESLHLVLHR HKQDHQGLEM QMQVLNQRVQ QVKDRQKNVL  180
STLARTINKP GLALSLMPQL EMNERKRRLP GNSFLYNETG LEDNQASSSE NTTRENMDHT  240
SLSTLNKEVL DQLESSLTFW EYTLRDIDQT RMRRSSSIDL DESISCADSP AISYPQLTVD  300
VGSKVSDIDM NSEPNGNTTP DVTPPENRVE TASHNVPTGV NDVFWEQFLT ENPGSTDVKP  360
EREDMESKIS ESKTVEDGKF WWNRKTVISL TEQLGHLTPA E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-241110326129Heat shock factor protein 1
5d5v_B3e-241110326129Heat shock factor protein 1
5d5v_D3e-241110326129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208ERKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0146190.0BT014619.1 Lycopersicon esculentum clone 134122F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027771687.10.0heat stress transcription factor A-4a-like
RefseqXP_027771688.10.0heat stress transcription factor A-4a-like
TrEMBLA0A3Q7FD010.0A0A3Q7FD01_SOLLC; Uncharacterized protein
STRINGSolyc03g006000.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-109heat shock transcription factor A4A