PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g035110.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 312aa MW: 34746.9 Da PI: 6.0234

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g035110.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.7	3.4e-42	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC+++Cv+apyfp +qp kf nvhk+FGasnv+kll++l+ +reda++sl+yeAe r+rdPvyG+vg+i+ lqq+l+q++ + Sopen02g035110.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPLKFSNVHKVFGASNVSKLLNELNAAQREDAVNSLAYEAEYRLRDPVYGCVGLISLLQQKLRQVQDD 99 7*******************************************************************************************9 PP DUF260 94 lallkee 100 l +++e Sopen02g035110.1 100 LLNARKE 106 9888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.389	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-41	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MSSTNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPLKFSNVH KVFGASNVSK LLNELNAAQR 60 EDAVNSLAYE AEYRLRDPVY GCVGLISLLQ QKLRQVQDDL LNARKELSTY IGPSGMLPIA 120 NLQPPGFFQP QQQPMNAPSS STMSPFNMNP MSGISTGVPH GGPLLIRDPQ QQQQQQQLLQ 180 QPIQVQQFIT AMAAKEQRDQ QEMLKFYEQQ EQQEDAVRFN SGFDSTGSVT ATGFHQMSSS 240 IPPSLVLAGT YENPYNLVPP HQQSQPEQSL SYQQQVHLQS QQQLQPPQPP ETPRQQQRAN 300 SEEEGRGSGP SG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-48	3	120	7	125	LOB family transfactor Ramosa2.1
5ly0_B	7e-48	3	120	7	125	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015064334.1	0.0	LOB domain-containing protein 36
Swissprot	Q9FKZ3	2e-77	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	M1AME7	1e-167	M1AME7_SOLTU; Uncharacterized protein
STRING	Solyc02g090410.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-74	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]