PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g034860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 366aa MW: 43042.3 Da PI: 8.7686 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.9 | 6.7e-17 | 26 | 117 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffk++ + +++ rl++p kf++ ++++++ + +l+ +sg++W v++ ++ + yv+ +GW+ Fvk++ L++ D++vFk+dg s f Sopen02g034860.1 26 FFKIM--INDFRR-RLRIPQKFVTCFKNSHKLLGQKILTGPSGNTWLVEV--IRTEEDYVFCNGWEVFVKDHSLEVADMLVFKMDGFSAF--D 111 67777..555555.6*******96665555555677889***********..99999**************************9887888..8 PP EEEE-S CS B3 94 vkvfrk 99 v++f++ Sopen02g034860.1 112 VMIFDA 117 888886 PP | |||||||
2 | B3 | 48.3 | 1.8e-15 | 264 | 341 | 7 | 87 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ++ + g+l lpk+ a++++ k s t+tl+ +s+ r+W+ + r + ++ v+++GW +F+ +n+L+e D++vF+l + Sopen02g034860.1 264 QPTHVYMGQLKLPKEWAQKNMRK--ISETITLRIPSSrRTWSASI--RCRMEGLVIQSGWDDFAMDNDLEEFDICVFELAQG 341 455555678***********866..67799999966559******..889999*************************8743 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-20 | 22 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.08E-21 | 22 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.929 | 23 | 118 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-12 | 26 | 118 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.93E-17 | 26 | 116 | No hit | No description |
Pfam | PF02362 | 1.2E-14 | 26 | 117 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.67E-19 | 253 | 342 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.7E-19 | 254 | 342 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.34E-14 | 257 | 357 | No hit | No description |
PROSITE profile | PS50863 | 11.688 | 258 | 359 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.1E-9 | 259 | 359 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-13 | 263 | 341 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MATICERCKV LEKQKYWEEF DKQHKFFKIM INDFRRRLRI PQKFVTCFKN SHKLLGQKIL 60 TGPSGNTWLV EVIRTEEDYV FCNGWEVFVK DHSLEVADML VFKMDGFSAF DVMIFDASAC 120 EKETTFFVKK NRNPCKHPDE VTDEHTTEQQ SSEDEPSNDD DVTDEDDNIQ EPTRGRKSSR 180 GKQYQFQSLQ SSKGKKMKKI LVAKQDNRRR KCTPMSSRKK NVEPEEKRPM FLNRRRVSEK 240 EKMRVHQLAS RHTSSVPSLL MTMQPTHVYM GQLKLPKEWA QKNMRKISET ITLRIPSSRR 300 TWSASIRCRM EGLVIQSGWD DFAMDNDLEE FDICVFELAQ GGKHDSKPVI LDVYIYPVEN 360 EIMRPL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015065402.1 | 0.0 | B3 domain-containing protein REM16-like | ||||
TrEMBL | A0A3Q7FC33 | 0.0 | A0A3Q7FC33_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g090170.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13603 | 12 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 6e-38 | B3 family protein |