PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g033390.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 460aa    MW: 50998.3 Da    PI: 5.8614
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g033390.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.8e-06119139323
                       ETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                       C+ Cgk F++   L  H+rtH
  Sopen02g033390.1 119 CKECGKEFPSMKALAGHLRTH 139
                       ********************9 PP
2zf-C2H215.54.8e-05148170123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C++Cgk F +   L  H+++H
  Sopen02g033390.1 148 HICEKCGKGFASMRALFGHMKVH 170
                       68*******************99 PP
3zf-C2H214.20.00013378400123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kCp+C+k+F++  +L  H r H
  Sopen02g033390.1 378 HKCPICSKVFPSGQSLGGHKRAH 400
                       79**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.5E-4932IPR007087Zinc finger, C2H2
SMARTSM003550.085931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.0085117139IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.97117144IPR007087Zinc finger, C2H2
PfamPF139125.2E-8118141IPR007087Zinc finger, C2H2
SuperFamilySSF576671.21E-10118170No hitNo description
Gene3DG3DSA:3.30.160.603.1E-5119147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
PfamPF139129.3E-4148172IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.074148175IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-4148171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.9E-4148170IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280150170IPR007087Zinc finger, C2H2
SuperFamilySSF576671.44E-5374402No hitNo description
PfamPF139121.0E-12377401IPR007087Zinc finger, C2H2
PROSITE profilePS501579.764378400IPR007087Zinc finger, C2H2
SMARTSM003550.016378400IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280380400IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MEETQGHKFI CKFCDKSCDS GKSLGGHMRG HLALISAAKN QKEEADSKMG SQEEEEAANT  60
HEDLSISEQS DGSMNQEKDN NISIGDDGDS VGYSLRENPR KSWRVSDLKV CSLETTNICK  120
ECGKEFPSMK ALAGHLRTHS KKGMEKCHIC EKCGKGFASM RALFGHMKVH SKRLRVDNQD  180
SESKQSLSDF DTVCPIRKKR SKIKYKMDAS SSFSGLNESS SAISEVDEME EAARCLMMLS  240
SGVTDWDEYI SISENSKNEN VILESEPFHC AKGISADAFT TVKHLSHTVF SDSGCVDGYE  300
KNYEISEFSD RLMLINTEIT KVCYSTEMQF ENDPSSSVVM QDLAFLNSCS VKNAGLNMGN  360
SQIGVIRTSP DPIKSKVHKC PICSKVFPSG QSLGGHKRAH YTGFTESKTK ETMVKKLDDV  420
ADNHKSFDLN NPVIAMDGEE KDVELKLWWV ESGDALMMSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064902.10.0zinc finger protein ZAT1-like
TrEMBLA0A3Q7FX210.0A0A3Q7FX21_SOLLC; Uncharacterized protein
STRINGSolyc02g088670.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-19C2H2-like zinc finger protein