PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g032070.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family E2F/DP
Protein Properties Length: 355aa    MW: 39836 Da    PI: 9.8187
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g032070.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP76.13.4e-242086171
           E2F_TDP  1 rkeksLrlltqkflklleksee.givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                      rk+ksL+ll+++flkl+ ++    ++ l+++a++L    v  +rRRiYDi+N+Le+++++++k+kn++rw+g
  Sopen02g032070.2 20 RKDKSLGLLCSNFLKLCDREGVdSTIGLDNAADQL---GV--ERRRIYDIVNILESVGVLSRKAKNQYRWNG 86
                      79*****************9888************...**..****************************98 PP
2E2F_TDP711.4e-22143222170
           E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwk 70 
                       rkeksL +l+q+f+kl+++s+ + ++l+++a++L+ +      +k+k RR+YDi+NV+ ++nliek     + k+ +rw+
  Sopen02g032070.2 143 RKEKSLMILAQNFVKLFHCSDVDLISLDKAASALLGDvhdpmAMKTKTRRLYDIANVFVSMNLIEKirspdNGKPVFRWI 222
                       79****************************************************************99999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-241887IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.19E-141984IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-272086IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.5E-212186IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.7E-19140223IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.3E-23143223IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.4E-17144222IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.41E-11145222IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MSSSLHTEDS QWKNPSIYSR KDKSLGLLCS NFLKLCDREG VDSTIGLDNA ADQLGVERRR  60
IYDIVNILES VGVLSRKAKN QYRWNGYSAI SKAVDLLKKE GLKDLSTVSS TCRNVSNVIA  120
CNNSDVKEKG EGKTAGSHKI DNRKEKSLMI LAQNFVKLFH CSDVDLISLD KAASALLGDV  180
HDPMAMKTKT RRLYDIANVF VSMNLIEKIR SPDNGKPVFR WIAWKENLRT GSLVSAKSDD  240
STRRTFGAEI TNTTPKRYRD DSSSDVMSNG QVKRLKVSKD DELKDKKQEI STEQLNERGT  300
KDFVFGPFGP SSLPRSGISG KENLKQIQNW EDLASKYHPQ YQNKDGSKHV QQGHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A2e-33192093222Transcription factor E2F8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063700.10.0E2F transcription factor-like E2FF isoform X3
TrEMBLA0A3Q7FAN70.0A0A3Q7FAN7_SOLLC; Uncharacterized protein
STRINGSolyc02g087310.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.14e-86DP-E2F-like protein 3