PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g031700.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 285aa    MW: 32319.7 Da    PI: 4.7565
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g031700.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.38.2e-2166119356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k++++t+eq++ Le+ Fe ++++  e++++LAkklgL+ rqV vWFqNrRa++k
  Sopen02g031700.1  66 KKRRLTPEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 119
                       5678*************************************************9 PP
2HD-ZIP_I/II135.12.5e-4365156192
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       ekkrrl+ eqv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l ++ ++++k++++L++e+ 
  Sopen02g031700.1  65 EKKRRLTPEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDQLKSSYDSLLSDFDSVRKDNDKLKSEVV 156
                       69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-2049123IPR009057Homeodomain-like
PROSITE profilePS5007118.41561121IPR001356Homeobox domain
SMARTSM003892.1E-2064125IPR001356Homeobox domain
CDDcd000861.57E-2066122No hitNo description
PfamPF000465.6E-1866119IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-2267128IPR009057Homeodomain-like
PRINTSPR000314.3E-692101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000314.3E-6101117IPR000047Helix-turn-helix motif
PfamPF021834.0E-18121162IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGSGHIFFDP SSCHGNMLFL GSGDPVFRGP RSTMMKMEDS SKRRPFFSSP EDLYDEEYYD  60
EQSPEKKRRL TPEQVHLLEK SFETENKLEP ERKTQLAKKL GLQPRQVAVW FQNRRARWKT  120
KQLERDYDQL KSSYDSLLSD FDSVRKDNDK LKSEVVSLME KLRGKVVAVA GGNEKSDMLE  180
VDAMTTLQVK VKAEDRLSSG SGGSAVVDEH SPQLVDSGDS YFHTDHEEYP GPGGCNVPPP  240
MDGLQSEEDD GSDDHGSCHG YFSNVFVAEE QHHEQGEEPI GWFWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM9022880.0AM902288.1 Solanum lycopersicum mRNA for homeodomain leucine zipper protein (hb-1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066714.10.0homeobox-leucine zipper protein HAT5
SwissprotQ022832e-94HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLB6GVA30.0B6GVA3_SOLLC; Homeodomain leucine zipper protein
STRINGSolyc02g086930.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78912330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-80homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]