PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g028730.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WOX
Protein Properties Length: 274aa    MW: 31259.4 Da    PI: 6.7932
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g028730.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.94.9e-202787357
                      --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      +R+t+t++q+++L++l+++   r p+ae+++++++kl    +++ ++V++WFqN++a+e++
  Sopen02g028730.1 27 SRWTPTSDQIRILKDLYYNngVRSPTAEQIQRISAKLrqygKIEGKNVFYWFQNHKARERQ 87
                      8*****************8678*************************************97 PP
2Wus_type_Homeobox113.98e-372589265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +++RWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
   Sopen02g028730.1 25 SSSRWTPTSDQIRILKDLYYnNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKK 89
                       789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.8E-112091IPR009057Homeodomain-like
PROSITE profilePS5007110.5922288IPR001356Homeobox domain
SMARTSM003891.7E-62492IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.0E-82787IPR009057Homeodomain-like
PfamPF000461.2E-172787IPR001356Homeobox domain
CDDcd000863.53E-72889No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MMEQQQHNIE DGGRNNNNSF MCRQSSSRWT PTSDQIRILK DLYYNNGVRS PTAEQIQRIS  60
AKLRQYGKIE GKNVFYWFQN HKARERQKKR LIAAASATDN NNISSMQMIP HLWRSPDDHH  120
KYNTTTTNPG VQCPSPSSHG VLAVGQTGNY GYGTLAMEKS FRECSISPPG GSYHQNLTWV  180
GVDPYNSMST TSPATYPFLE KSNNKHYEET LDEEQEEENY QRGNSALETL SLFPMHEENI  240
ISNFCIKHHE SSGGWYHSDN NNLAALELTL NSFP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5383290.0AJ538329.1 Lycopersicon esculentum mRNA for wuschel protein (wus gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065524.10.0protein WUSCHEL
SwissprotQ84VT70.0WUS_SOLLC; Protein WUSCHEL
TrEMBLA0A3Q7F7V40.0A0A3Q7F7V4_SOLLC; Uncharacterized protein
STRINGSolyc02g083950.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76042331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.14e-39WOX family protein
Publications ? help Back to Top
  1. Reinhardt D,Frenz M,Mandel T,Kuhlemeier C
    Microsurgical and laser ablation analysis of interactions between the zones and layers of the tomato shoot apical meristem.
    Development, 2003. 130(17): p. 4073-83
    [PMID:12874128]