PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g025440.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 827aa    MW: 94546.5 Da    PI: 6.9106
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g025440.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like346.7e-11455479226
           G2-like   2 prlrWtpeLHerFveaveqLGGsek 26 
                       prlrWt++LH+ Fv+av++LGG ++
  Sopen02g025440.1 455 PRLRWTHDLHRLFVHAVDHLGGVDR 479
                       8*********************998 PP
2G2-like37.93.9e-12500525227
           G2-like   2 prlrWtpeLHerFveaveqLGGsekA 27 
                       prlrWt++LH+rFv+av++LGG ++A
  Sopen02g025440.1 500 PRLRWTHDLHRRFVHAVDHLGGVDHA 525
                       8**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142238.4E-3280219No hitNo description
Gene3DG3DSA:1.10.10.602.1E-8452480IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-10497527IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MAAPPTPQEG ASQTRPPLFN GKYYGWWKNR MMDHLIGENP DLWGVILDGP TIPMKTATDG  60
ITKIPKERKE WNVEDKLAIQ NNAKAKKILI CGIGPDEYNR ISSCQDAKAI WETLQTAHEG  120
TTQVKKSKID NLNRQYELFR MAEGETIQDM HTRFTSIINE MYSLGEIVPN GKAVRKLLSV  180
LPETWESKVE AITEARDLDS LAMDELIGNL ITYELKKNQE KEIGGKRKER NLVLNKNASD  240
DFEDENIALI TKRFTRMLKR GQTFQKKTSQ KPSENTKDQV CHKCGSPDHF IKFCPLWALE  300
QKKANFEKVK DIKNDKYIPT NRRMTNQEAD LSTRRAFAAM GDLSEEEFED GGFENQSLLA  360
IEQSNKYDFL ALIAETDSED DEEDDKQSKV LKIDKGWFSV NQLEIHLIWE NMMMRHSHEG  420
LEYEELEKNQ SKHGNSSSDK SSEFAIRAYV KPRMPRLRWT HDLHRLFVHA VDHLGGVDRN  480
SSSDKSSEFA IRAYVKPRMP RLRWTHDLHR RFVHAVDHLG GVDHAANGRK RNRTDGSDSM  540
NIPQGNLVHC YNHNNGKAPI FDGFDQMNFP QGNLAHRYNH NNGKFVFDGH LNPTVTTNYL  600
DKIASSSTVF PPPWKPMPEK KMGLEGRCYM FRDFFDGTIT IRDGDDDNKI VRAYGISNLP  660
NKSATSMIEE EDSHSTMPLE LSLKAANGRK KNRIDGPDSM NFPQGNLVHR YNHINGKAAV  720
FDGSNQMNFP QENLVHCYNH NNNKAAMKPM PEKKMRLEGR CYMFRDFFNG TITIRDGDDD  780
DKIVRAYGIS NLPNKSATSM IEEEDSHNTM SLELSLSSDI SLDLALG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027771942.10.0uncharacterized protein LOC114076751
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42660.11e-08G2-like family protein