PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G42660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | G2-like | ||||||||
Protein Properties | Length: 255aa MW: 28913.8 Da PI: 9.7069 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.6 | 1e-31 | 51 | 104 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+av++LGG+++AtPk +le+m++kgL+++hvkSHLQ+YR+ AT2G42660.1 51 PRLRWTPDLHLSFVRAVQRLGGPDRATPKLVLEMMNLKGLSIAHVKSHLQMYRS 104 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-29 | 47 | 105 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.664 | 47 | 107 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-14 | 51 | 105 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.7E-23 | 51 | 106 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-9 | 52 | 103 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MAGRSSPGKC STWLDLNREE TVEKNNEEES SVEDEDQITN NVRQYIRSNM PRLRWTPDLH 60 LSFVRAVQRL GGPDRATPKL VLEMMNLKGL SIAHVKSHLQ MYRSKKLEPS SRPGFGAFMS 120 GQRSYLMDMI DSRCIPHSDL RHAYNSKTVP SRVLNQDAVV TNLGGNFLMR PSSWFSGLCR 180 NDRDSTENKT LPLLEIRKKN NEKRVRDEEV SSVKRLKSMS GGGIQLPEFG NCRQKPTDDI 240 NTMLSLSLLS TSSEP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 7e-18 | 52 | 106 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-18 | 52 | 106 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-18 | 52 | 106 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-18 | 52 | 106 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 263977_at | 0.0 | ||||
Expression Atlas | AT2G42660 | - | ||||
AtGenExpress | AT2G42660 | - | ||||
ATTED-II | AT2G42660 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G42660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G42660 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY074640 | 0.0 | AY074640.1 Arabidopsis thaliana F14N22.7/F14N22.7 mRNA, complete cds. | |||
GenBank | AY078938 | 0.0 | AY078938.1 Arabidopsis thaliana At2g45350/F14N22.7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_181794.1 | 0.0 | Homeodomain-like superfamily protein | ||||
TrEMBL | Q9SJJ0 | 0.0 | Q9SJJ0_ARATH; At2g45350/F14N22.7 | ||||
STRING | AT2G42660.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM363 | 28 | 184 | Representative plant | OGRP285 | 15 | 123 |
Link Out ? help Back to Top | |
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Phytozome | AT2G42660.1 |
Entrez Gene | 818866 |
iHOP | AT2G42660 |
wikigenes | AT2G42660 |
Publications ? help Back to Top | |||
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