PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g023130.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LSD

Protein Properties

Length: 390aa MW: 42371.1 Da PI: 4.3571

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g023130.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	37.3	4.6e-12	301	325	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCr lLsY GA++V+C++C+tV Sopen02g023130.1 301 CGGCRQLLSYSQGAKLVKCSCCQTV 325 ************************9 PP
2	zf-LSD1	44.4	2.7e-14	339	363	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC++C ++ Sopen02g023130.1 339 CGGCAVLLMYPYGAPSVRCSSCRHM 363 **********************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.1E-15	298	328	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	5.2E-10	301	325	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	6.6E-10	336	364	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	8.6E-12	339	362	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MEEKLSHIEN QQLDDDDEEE DEGPPPGFDS LAVPSQNTNV VIDEDDDEGP PPGWPSIPQQ 60 HNLQTTDVEM GSKEHKSEDD EDGPPPGWNT VISQKKLPSS PPTLEAVTCD IEMEKKEEII 120 KNEDNGPPPI WQLTPKLPAL QTSTPPSATQ GASLEDIEME KKEEAVEDED NGPPPGWQLT 180 PQLLPLQTST PPSGIQGAPL ADVEMASSQD CDVEKEGHPL GSESVPMNGH SSPPTPPLQS 240 SSSVASSEME MGRKQEGTKN EEERPQSEKQ PMSHLVQMKP IVPQASSHAA TVSSEMGQMV 300 CGGCRQLLSY SQGAKLVKCS CCQTVNLVLE AHEVGQVKCG GCAVLLMYPY GAPSVRCSSC 360 RHMTKIGAHN RRPPQSVQQP RRRHPSYQVH

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MEEKLSHIEN QQLDDDDEEE DEGPPPGFDS LAVPSQNTNV VIDEDDDEGP PPGWPSIPQQ  60
HNLQTTDVEM GSKEHKSEDD EDGPPPGWNT VISQKKLPSS PPTLEAVTCD IEMEKKEEII  120
KNEDNGPPPI WQLTPKLPAL QTSTPPSATQ GASLEDIEME KKEEAVEDED NGPPPGWQLT  180
PQLLPLQTST PPSGIQGAPL ADVEMASSQD CDVEKEGHPL GSESVPMNGH SSPPTPPLQS  240
SSSVASSEME MGRKQEGTKN EEERPQSEKQ PMSHLVQMKP IVPQASSHAA TVSSEMGQMV  300
CGGCRQLLSY SQGAKLVKCS CCQTVNLVLE AHEVGQVKCG GCAVLLMYPY GAPSVRCSSC  360
RHMTKIGAHN RRPPQSVQQP RRRHPSYQVH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	1e-102	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015063653.1	0.0	uncharacterized protein LOC107008945 isoform X2
TrEMBL	A0A0V0IMR9	0.0	A0A0V0IMR9_SOLCH; Putative ovule protein
TrEMBL	A0A3Q7F3X0	0.0	A0A3Q7F3X0_SOLLC; Uncharacterized protein
STRING	Solyc02g078270.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11642	22	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	1e-31	lsd one like 2