PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g022450.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ARF | ||||||||
Protein Properties | Length: 748aa MW: 81498.8 Da PI: 7.6915 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.7 | 2.5e-24 | 160 | 261 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ + ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + Sopen02g022450.2 160 FCKTLTASDTSTHGGFSVPRRAAEDCfapldyrQ--QRPSQELVAKDLHGIEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLR-- 248 99****************************9743..345679************************************************4.. PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 + ++el+++v+r+ Sopen02g022450.2 249 TGDGELRLGVRRA 261 4788899999986 PP | |||||||
2 | Auxin_resp | 117.3 | 1.3e-38 | 286 | 367 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a++ +s++++F+++YnPr s+s+F+v+++k++k+l +++s+GmRfkm++eted++e+r++G+vvgvsd+dpvrWp+SkWr+L Sopen02g022450.2 286 AVNVISSRNAFNICYNPRGSSSDFIVPYHKFSKTLAHPFSAGMRFKMRVETEDAAEQRFTGLVVGVSDVDPVRWPGSKWRCL 367 68999****************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-39 | 154 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.02E-40 | 157 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.79E-21 | 158 | 260 | No hit | No description |
SMART | SM01019 | 1.3E-21 | 160 | 262 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.4E-22 | 160 | 261 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.507 | 160 | 262 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.9E-33 | 286 | 367 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 748 aa Download sequence Send to blast |
MMCGLIDLNT VDNDDAGEET TAPVSLDSPA SSSAASGSSD LTSSTTPAVA SVCMELWHAC 60 AGPLISLPKK GSAVVYLPQG HLEHLSEYPP IASNLPPHVF CRVVDVKLQA DAVTDEVYAQ 120 VSLVPDNQQI EQKWKDGDID ADTEEEEIEG AGKSITPHMF CKTLTASDTS THGGFSVPRR 180 AAEDCFAPLD YRQQRPSQEL VAKDLHGIEW KFRHIYRGQP RRHLLTTGWS AFVNKKKLVS 240 GDAVLFLRTG DGELRLGVRR AAQAKTCSSY LAPCSKPLNV SGIVDAVNVI SSRNAFNICY 300 NPRGSSSDFI VPYHKFSKTL AHPFSAGMRF KMRVETEDAA EQRFTGLVVG VSDVDPVRWP 360 GSKWRCLLVR WDDLDVSRHN RVSPWEIEPS GSAPVPSSLV MPSAKRTRVG FPISKADFPI 420 PREGIAVSDF GESSRFQKVL QGQEILRMHA PYGGLDARSP RPAGTRCFPG FPSSGISRMG 480 NSIRPLFGDT DKSHESIGFS ESLRFNKVLH GQEIFTSPPY GRAQAGIQMQ EKSRTGIFVG 540 IQVPNHGNRW PAPNQDNNTP CKSINPVSAS SPPSTLNFQH PSPPASKFQA MFNHKHGKHD 600 LVNQASLDLS ENCCRYLSSG SHTEDSSRKE GTQGISSFGF LKEQKQTGLS YLSLGTQSSF 660 KGNQNLVSTC KTSCRIFGFP LTESKISATR ADTPSEAVYS HGLETTFLPS GDGKLQPGPP 720 LMTNVVGTNF TKVNDLYAAR DVLLDIAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-108 | 51 | 392 | 18 | 357 | Auxin response factor 1 |
4ldy_B | 1e-108 | 51 | 392 | 18 | 357 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00021 | PBM | Transfer from AT2G33860 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ340254 | 0.0 | DQ340254.1 Lycopersicon esculentum auxin response factor 3 (ARF3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015066501.1 | 0.0 | auxin response factor 3 isoform X1 | ||||
Refseq | XP_027770493.1 | 0.0 | auxin response factor 3 isoform X1 | ||||
Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | M1D4H7 | 0.0 | M1D4H7_SOLTU; Auxin response factor | ||||
STRING | PGSC0003DMT400081282 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6101 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 0.0 | ARF family protein |