PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g022290.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WOX
Protein Properties Length: 357aa    MW: 40089.5 Da    PI: 7.8444
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g022290.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.81.6e-1748108257
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       ++R+++ +eq+++Le+ F++   +p ++e++++ +kl    ++ +++V++WFqNr+ + k+
  Sopen02g022290.2  48 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIRKIRAKLqeygQVGDANVFYWFQNRKSRSKH 108
                       89*****************99*************************************995 PP
2Wus_type_Homeobox111.93.4e-3647110265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++kq
   Sopen02g022290.2  47 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIRKIRAKLQEYGQVGDANVFYWFQNRKSRSKHKQ 110
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.72E-1244114IPR009057Homeodomain-like
PROSITE profilePS5007110.38244109IPR001356Homeobox domain
SMARTSM003894.9E-946113IPR001356Homeobox domain
CDDcd000867.22E-847110No hitNo description
Gene3DG3DSA:1.10.10.601.2E-647114IPR009057Homeodomain-like
PfamPF000463.9E-1548108IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0030010Biological Processestablishment of cell polarity
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPCNSH HHQWQHDINS SIIQQRPPCN PERSPEPKPR WNPRPEQIRI  60
LEAIFNSGMV NPPRDEIRKI RAKLQEYGQV GDANVFYWFQ NRKSRSKHKQ RHLQAKAQQQ  120
QQHNNNNNSS HQPIITSSSS SSDKSSPNSL TFSIGTSNVM DLLNSPTSSV NQQNYNEFLS  180
NEQPFFFTVQ PPAVVPTHDH SAMSQGFCFQ DSSTFSPHSS SSGLLLNEWM GISTTNSKKD  240
ENDKINLQSQ LMTYTLTSTV SPLATTTIPT ISHIQGVTVD PNDGGPTRST VFINDVAFEV  300
GIGPFNVREV FGEDAVLIHS SGEPLITNEW GITIQPLQHG AFYYLLRTSS IASTHHI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1906630.0FJ190663.1 Solanum lycopersicum cultivar M82 COMPOUND INFLORESCENCE (S) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027770354.10.0WUSCHEL-related homeobox 9-like isoform X2
TrEMBLB6E0Y50.0B6E0Y5_SOLLC; COMPOUND INFLORESCENCE
STRINGSolyc02g077390.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45980.18e-72WUSCHEL related homeobox 8