PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g022280.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 377aa    MW: 42814.4 Da    PI: 7.322
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g022280.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26086.34.3e-2730125194
            DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                       aCa+Ck++r+kC ++ Cv+ ++fpa+++ +f  vhk+FG snv+k +k+ ++   +++ ++s ++eA+ +++dPv+G +g ++kl++ql++++
  Sopen02g022280.1  30 ACASCKHQRKKCMSGdCVMWRHFPASKMDEFLGVHKVFGISNVTKKIKSFDDVAqQDESIKSFLWEAKLWQEDPVHGPLGEYKKLEKQLMEEQ 122
                       7***********8855**********************************6654399********************************9988 PP

            DUF260  92 ael 94 
                        + 
  Sopen02g022280.1 123 RNK 125
                       654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.93629132IPR004883Lateral organ boundaries, LOB
PfamPF031955.6E-2830125IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MPNNNDDDNN NCNSNSGEDE LQEVGSNRPA CASCKHQRKK CMSGDCVMWR HFPASKMDEF  60
LGVHKVFGIS NVTKKIKSFD DVAQQDESIK SFLWEAKLWQ EDPVHGPLGE YKKLEKQLME  120
EQRNKQLQIV QFPHVPQVPI ITTSESTTRY VPPLAIDQDH RENGANCNRQ DYNMLNSSVP  180
NYANHLQWHG QGVETQGITN NGSNLINIGF GNDMFGYGNL PYRPIEQIRN GYIPMVHRQA  240
TYNNGGHVQL HEQRFPYNSV DLGVERRRKD QSDQFVHPNF NGRHVRGRGI GSIGPMIRHS  300
PIISNCSSGS TVDSIIVNAV RTMANHSVNG RHVEDGRNQR AQGFATVLQD FTNYNHNDLP  360
GEHKQRDMDN RDHSTSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-15251247103LOB family transfactor Ramosa2.1
5ly0_B5e-15251247103LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027770477.10.0uncharacterized protein LOC114076116
TrEMBLA0A3Q7F3I50.0A0A3Q7F3I5_SOLLC; Uncharacterized protein
STRINGSolyc02g077380.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA140941012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.13e-21LOB domain-containing protein 2