PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g018540.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 306aa    MW: 34947.4 Da    PI: 8.7725
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g018540.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.23.8e-172497272
          trihelix  2 WtkqevlaLiearremeerlrr...gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72
                      Wt +e++ Liea++ ++er  r   gk  + +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++  
  Sopen02g018540.1 24 WTVKETMILIEAKKMDDERRMRrqeGKPTELRWKWVEDYCWRNGCLRSQNQCNDKWDNLMRDFKKVREYERRVV 97
                      *************966555543233678899*************************************999864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.2361683IPR017877Myb-like domain
PfamPF138374.2E-132394No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDRLVGDQGG SSSSMFRDYR KGNWTVKETM ILIEAKKMDD ERRMRRQEGK PTELRWKWVE  60
DYCWRNGCLR SQNQCNDKWD NLMRDFKKVR EYERRVVEGS GEGIIRSYWK IEKNERKEKN  120
LPTNMLPEIY EALVEVMDKK SQRMLLPSLP PTLQQQSTPL PLPPITTTVT QTDYTTNVPF  180
TTMCDSSDPD HSSERSDSSA KKRRMRGGGE GTSGTSKCNI DNASQEVGSA ISKSAAIIAE  240
AIQSCEERGD RRHKELLSLH QRRLQIEESK VEINKEGING LVDSINKLAN SILALAGNKN  300
QSTDPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064287.10.0trihelix transcription factor ASR3-like isoform X1
TrEMBLA0A3Q7F3720.0A0A3Q7F372_SOLLC; Uncharacterized protein
STRINGSolyc02g069390.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48212236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.12e-59Trihelix family protein