PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g015280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | LBD | ||||||||
Protein Properties | Length: 292aa MW: 33022 Da PI: 6.6676 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137 | 7e-43 | 7 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC+++Cv+apyfp +qp+kf+nvhk+FGasnv kll++l+ ++reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+q++ + Sopen02g015280.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPRKFENVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEYRLRDPVYGCVGLISILQHKLKQVQDD 99 7*******************************************************************************************9 PP DUF260 94 lallke 99 l +k+ Sopen02g015280.1 100 LLNAKK 105 987776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.766 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-42 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009954 | Biological Process | proximal/distal pattern formation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0048441 | Biological Process | petal development |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPRKFENVH KVFGASNVAK LLNELNATQR 60 EDAVNSLAYE AEYRLRDPVY GCVGLISILQ HKLKQVQDDL LNAKKDLATY IGPQAMLPML 120 QHSGYIQQHP NNPSSSNMMA YNMQPMGLQT GMQQHGAQLM MRDPQQQQQQ QHQVIEAHQL 180 AAVMAAREQE MMRTYEQPQQ QQFNNGYDSA GPVTATGFHQ MSSSVSPSLA LASFDNDPYQ 240 IQQAQQEQHQ VQVQVQPHQL LQQQQQLPQQ PQTPQQQQRA NSEEERSIGP SC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-47 | 3 | 110 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-47 | 3 | 110 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015065356.1 | 0.0 | LOB domain-containing protein 36-like | ||||
Swissprot | Q9FKZ3 | 3e-81 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A3Q7F1F7 | 1e-174 | A0A3Q7F1F7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g065150.1.1 | 1e-175 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 2e-81 | ASYMMETRIC LEAVES 2-like 1 |
Publications ? help Back to Top | |||
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